Detail information of AT1G19580_circ_g.3


General Information
CircRNA Name AT1G19580_circ_g.3
ID in PlantcircBase ath_circ_003427
Alias 1:6775306-6776394
Organism Arabidpsis thaliana
Position chr1: 6775306-6776394  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G19580
Parent gene annotation GAMMA CA1
Parent gene strand +
Alternative splicing AT1G19580_circ_g.1 AT1G19580_circ_g.2
Support reads 1/1
Tissues root;leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G19580.1:3
AT1G19580.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGGGTGCGACACTTCTTGATGGGGTCGTTGTTGAAAAGCATGGGATGGTTGCTGCTGGTGCA
CTTGTACGACAAAACACCAGAATTCCTTCTGGAGAGtgtcaaggcatcggacactgatgaatgt
atttgataaggctccgattgtggacaaggaagcttttgtggcaccaagcgcctcagttattggg
gacgttca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 422
Transcript exons: 6775306-6775449,6776015-6776140,6776243-6776394
TGTCAAGGCATCGGACACTGATGAATGTATTTGATAAGGCTCCGATTGTGGACAAGGAAGCTTT
TGTGGCACCAAGCGCCTCAGTTATTGGGGACGTTCACATTGGAAGAGGATCGTCCATTTGGTAT
GGATGCGTATTACGAGGCGATGTGAACACCGTAAGTGTTGGGTCAGGAACTAATATTCAGGACA
ACTCACTTGTGCATGTGGCAAAATCAAACTTAAGCGGGAAGGTGCACCCAACCATAATTGGAGA
CAATGTAACCATTGGTCATAGTGCTGTTTTACATGGATGTACTGTTGAGGATGAGACCTTTATT
GGGATGGGTGCGACACTTCTTGATGGGGTCGTTGTTGAAAAGCATGGGATGGTTGCTGCTGGTG
CACTTGTACGACAAAACACCAGAATTCCTTCTGGAGAG

Genomic sequence TGTCAAGGCATCGGACACTGATGAATGTATTTGATAAGGCTCCGATTGTGGACAAGGAAGCTTT
TGTGGCACCAAGCGCCTCAGTTATTGGGGACGTTCACATTGGAAGAGGATCGTCCATTTGGTAT
GGATGCGTATTACGAGGTGAGCTAGCTACTAAGCCTCAATGTTTGGTGTTTGGTGGTTGACTAT
TTTAGTGACTGAAGTTTTGTTTGAAATAGTATCTACTTCTGTATCCTTAGCTGTGTCAACTCTT
ACGATAGAAAATAGTGAACGAATATCTGTTTTTTACTCTTCTGGTTAAGCGATGAACAAGACTA
CTACTCAAAATGGAGCTTTCTAGCTTTATTGAAGGATCTTAAACAGATCATTACTACATATCGT
ATCTTGATGATACTGGCAGTTGCTCTAATGGGTGATTGGGTATATGATATCCCCAATCATATAC
AGAATGCTTTCATGTCATAACACCAGAATTAGTTGAACGATATCATATACAGATTATTGAGTTT
GAGTTGAATCCTTATTGCGAGTATGAGTTGGCTAGTCTGGATTTTTATTTAATGGTGATGAAAT
AGGGTTGTCCTTTTTACAGAATGCTTTCATGTCATAACACATTGGTACTGTATGGCTAAGCCTG
TTAGTACTTTACCAGGAAACTGGGATAACATACAATCTAAACTTGCTTTCTCTCTTTTTTTCTG
CGCAGGCGATGTGAACACCGTAAGTGTTGGGTCAGGAACTAATATTCAGGACAACTCACTTGTG
CATGTGGCAAAATCAAACTTAAGCGGGAAGGTGCACCCAACCATAATTGGAGACAATGTAACCA
TTGGTTAGTGGGAATCTCTTACTCACTGTTTATTTTGAAAATGTTTAATATGCATACATCTCCA
AGAAGCATTTGGGATATAGTCTTAAATTAAATGTGTAACAGGTCATAGTGCTGTTTTACATGGA
TGTACTGTTGAGGATGAGACCTTTATTGGGATGGGTGCGACACTTCTTGATGGGGTCGTTGTTG
AAAAGCATGGGATGGTTGCTGCTGGTGCACTTGTACGACAAAACACCAGAATTCCTTCTGGAGA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.318425731
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020