Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05820_circ_g.1 |
ID in PlantcircBase | ath_circ_000852 |
Alias | At_ciR5997 |
Organism | Arabidpsis thaliana |
Position | chr1: 1750362-1752230 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G05820 |
Parent gene annotation |
Signal peptide peptidase-like 5 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G05820.3:7 AT1G05820.2:7 AT1G05820.1:7 AT1G05820.4:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.107225865 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1750413-1752227(+) |
Potential amino acid sequence |
MTAQFGTMLPSDKDKAVKLPVALTTPLDSCSNLTSKLSWSIALSVRGECAFTVKAQVAQAGGAA ALVLINDKEELDEMVCGEKDTSLNVSIPILMITTSSGDALKKSIMQNKKVELLLYAPKSPIVDY AVVFLWLMSVGTVFVASVWSHVTSPKKNDEQYDELSPKKSSNVDATKGGAEEETLDISAMGAVI FVISASTFLVLLFFFMSSWFILILTIFFVIGGMQGMHNINVTLITRRCSKCGQKNLKLPLLGNT SILSLVVLLFCFVVAILWFMNRKTSHAWAGQDIFVKVENWVNGENGETFTAMTAQFGTMLPSDK DKAVKLPVALTTPLDSCSNLTSKLSWSIALSVRGECAFTVKAQVAQAGGAAALVLINDKEELDE MVCGEKDTSLNVSIPILMITTSSGDALKKSIMQNKKVELLLYAPKSPIVDYAVVFLWLMSVGTV FVASVWSHVTSPKKNDEQYDELSPKKSSNVDATKGGAEEETLDISAMGAVIFVISASTFLVLLF FFMSSWFILILTIFFVIGGMQGMHNINVTLITRRCSKCGQKNLKLPLLGNTSILSLVVLLFCFV VAILWFMNRKTSHAWAGQDIFVKVENWVNGENGETFTAMTAQFGTMLPSDKDKAVKLPVALTTP LDSCSNLTSKLSWSIALSVRGECAFTVKAQVAQAGGAAALVLINDKEELDEMVCGEKDTSLNVS IPILMITTSSGDALKKSIMQNKKVELLLYAPKSPIVDYAVVFLWLMSVGTVFVASVWSHVTSPK KNDEQYDELSPKKSSNVDATKGGAEEETLDISAMGAVIFVISASTFLVLLFFFMSSWFILILTI FFVIGGMQGMHNINVTLITRRCSKCGQKNLKLPLLGNTSILSLVVLLFCFVVAILWFMNRKTSH AWAGQDIFVKVENWVNGENGETFTAMTAQFGTMLPSDKDKAVKLPVALTTPLDSCSNLTSKLSW SIALSVRGECAFTVKAQVAQAGGAAALVLINDKEELDEMVCGEKDTSLNVSIPILMITTSSGDA LKKSIMQNKKVELLLYAPKSPIVDYAVVFLWLMSVGTVFVASVWSHVTSPKKNDEQYDELSPKK SSNVDATKGGAEEETLDISAMGAVIFVISASTFLVLLFFFMSSWFILILTIFFVIGGMQGMHNI NVTLITRRCSKCGQKNLKLPLLGNTSILSLVVLLFCFVVAILWFMNRKTSHAWAGQDIF(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |