Detail information of BGIOSGA015213_circ_g.2


General Information
CircRNA Name BGIOSGA015213_circ_g.2
ID in PlantcircBase osi_circ_014286
Alias Chr04:17871753_17872145(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16241094-16241486  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015213
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   TT-AC
Number of exons covered BGIOSGA015213-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCAGTTGGAGAGCATCCGAATTAGCTAAATCTGCATTAGCCGGAGTGACAGCCAAGATAATAC
AACTTGGATGCTTAATGTATTGCATGATCATTGACCctacataaccaagcttgagggggatcac
atttcccagtaaaaagttacgagcatcagtgcccctgtccatgatgtccaactaggccattgaa
gcaaggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTACATAACCAAGCTTGAGGGGGATCACATTTCCCAGTAAAAAGTTACGAGCATCAGTGCCCCT
GTCCATGATGTCCAACTAGGCCATTGAAGCAAGGTTAACATAGTGATCACAAAGTAAGTAAAGG
GTATGCACTATTGTTTATATATTGCAAAAGTACCTTGGTGATAACACCAATTGTTCGAGAACCT
GCCAGAACAACAATAAATTTGCATTCATAAATCATTCCACGGTAAAGAAACTTATAACTACAAC
CAGAGTTATTTAAGTACCATCAGGATCAGCAAGCTTTGCCAGTTGGAGAGCATCCGAATTAGCT
AAATCTGCATTAGCCGGAGTGACAGCCAAGATAATACAACTTGGATGCTTAATGTATTGCATGA
TCATTGACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021