Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G20970_circ_g.1 |
ID in PlantcircBase | ath_circ_003697 |
Alias | 1:7317262-7317441 |
Organism | Arabidpsis thaliana |
Position | chr1: 7317262-7317441 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G20970 |
Parent gene annotation |
BEST Arabidopsis thaliana protein match is: proton pump interact or 1 (TAIR:AT4G27500.1) /.../30201 Blast hits to 17322 proteins in 780 species: Archae - 12 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 1/2 |
Tissues | seedling;flower |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G20970.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.265476511 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |