Detail information of AT2G05310_circ_g.2


General Information
CircRNA Name AT2G05310_circ_g.2
ID in PlantcircBase ath_circ_012845
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1934056-1934132  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT2G05310
Parent gene annotation Expressed protein
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05310.2:1
AT2G05310.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTAGTTCTGTGGCTAAACGAAGAAGAGGGAATGCAGAcaatgatgaatatgaagaagatgatg
aggttatggaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATGATGAATATGAAGAAGATGATGAGGTTATGGAATCATTAGTTCTGTGGCTAAACGAAGAA
GAGGGAATGCAGA
Conservation Information
Conserved circRNAs NA
PMCS 0.179653683
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017