Detail information of BGIOSGA005096_circ_igg.1


General Information
CircRNA Name BGIOSGA005096_circ_igg.1
ID in PlantcircBase osi_circ_011145
Alias Chr01:42005193_42009963(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 44511751-44516521  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA005096_circ_g.1 BGIOSGA005096_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGTGACTGTGAAGGAGATTGCGCAAACAACAAAAACTGCTCATGCGCGCAGCGCAATGGTTC
TGATTTACCTTATGTATCACACAAGAACATTGGCAGggaggagcagaaaagagcacaagctgtg
ttacaggaaggccagaagcgtccatcaaagcggcctgacttgaaagccattacaaaggtgctgt
gttgctct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGGAGCAGAAAAGAGCACAAGCTGTGTTACAGGAAGGCCAGAAGCGTCCATCAAAGCGGCCT
GACTTGAAAGCCATTACAAAGGTGCTGTGTTGCTCTTTGCGTTTTGAATTTTGGGTGATATTTG
CCATACACAGATATCCCCAAAAATGCCTCTCTTCCATACGGTGTTTTAGAGAAAACACATACCT
GTTTTGCTTGGGTTACACTTACAACTATTGTTATAATTCTAGATGCAAGAAAGCAATGCCGTGC
TTTATCCAGAGAAGATAATAGGGGAACTACCTGGTTAGTATATTCTCTTTTCCTAACAAGGGAA
CCTTGTGGTGTAGTGATTCGAACTAGAGATACCTGGTCTATTCTCATTTTATGTTTGCCCCATA
TGTATGTATTCTAAAGCAAGGATTTTCAATATAATGTCGTTCTTCTTCCTTGCCAGGTGTTGAT
GTTGGGGATCAATTTTATTCTCGTGCCGAGATGGTTGTTTTGGGCATTCATAGTCATTGGCTGA
ATGGCATTGATTATATGGGAATGAAATATCAGGGAAAGGTAAATACTGTACATTTCCATATCAA
CTAAAATAAATCATGTTGTACAATATTTTGTTCATCTGATAATGGAACTACAACTTACACTAGT
ATACTTAGTTGTATCGTTGTAGCTTGTTATTCAGACATGGCATCATTGGTTCAAGAAGGCCCTA
AACACTGGATGGTTAGCAGTTCTAGAGCCTAGCGCCTAGGAGTGCCTAGACACCGCATAAAACC
AACTTGACTAGGGGCTTCCTAGCAATCAGCAAGCATATGACAGAAAAAGAAGACAATTGAACAT
AAATATAATAGCACTAGAGTTCCCACGGTAGGGCAAGCCCCTAATGCCAAATTGCGGTGGCTAT
CCAGCACCAAGCGCTGACTTTTAGAACACACATAGCATTCTCTTTTAGTTTTCTCTCAGGTTTA
TAGTTCTTTGTTGCTGCATTTGGTTTTAATTACTTTCTTAGACCTCCTTTGGAACATAGTACTT
AGATTTCTGCAGAAATTAGTTCAATTCCTATAAAAACAAAATGATAGCAAATTCAAAGTTCCAA
AATAAAAATAAAAACTGCTTACAGATAAATGTTACTGTTTCTTTGGGTTTTTCTGCTGAACTAA
TTAATTTAGCAATTCTCCTTTAAACAGGAGGAGTATGCAAACCTAACTTTCCCACTGGCAACTT
GTATTGTCATGTCGGGAATATATGAAGATGATCTTGATAAGGCAGATGAAATTATTTATACTGG
TCAAGGAGGAAATGATTTACTCGGTAATCATCGCCAAATTGGCTCTCAACAACTGCAACGTGGA
AATTTGGCATTGAAGGTTAGTTATGGTGGTTTTCTTTTACTACTGTATGATAATTATTTATGTT
GTTTGAAGGGTATCCATTTATTTCAGTGATGATATATCCTTTTTTAAAAATTATAGCCAATTAA
TTGTGCACTATACGAATACCAACTATTTAAGATGTAAATTTCAGATTTGCATAGTTTCCATGAG
CTGTCATTGTGGATAATCTATTCCTTTTCAGAAGATATAGGATTTATATGCATAGACGGTGCTT
GTTTTCAGAATGCTTTTTTTTGTGCTGGATTATAATACATTCCGATTGTGGCTTGTTTGACGTA
TTTTTGCTTGCATCTTTGAGTAAAGGCATTCTATTAAATACGTTTCAATTTGTTTGTATCTTTC
AGTTTGCAAAATGTTGTTCCTTAGTATTTATGCCAATGGCATTATTTTTCTTCTGAACTTTGTT
TCATTTTGACCCTTTCTCTGTTTTGGTAATATTGCAGAACAGTAAGGATAATGGCAATCCCATA
AGAGTTATCCGAGGACATATATCAAAGAATAGCTACACTGGGAAGGTCTACACCTATGATGGGC
TGTACAAGGTAGTATCTTTTCTTAATCTCTTCAAATATCATGTTACTTTTTTCGATAATGGAAG
CTTTATTAAAACTCAGTTAAATACACCAAGATGATACATTTCAACTGAGCCCACTACCAGCCTC
TGCATAGGATGCACACAGCCAGACACAAAGAAAGACCTATCTAGACCCCCTTCACGAAACAAAG
ATATTAGTGGCTATCAATCCGTAGACTAGATCGTGCCTCGGTAAAAACCTCCCGTGCCACCTGG
TCCAAATGTCGCGATACCACCACAATAGTATCCCGAAGACCTGGTTTGTGGATGATAGCCTAGG
TACGAAGCCACCGGGTGACTAAAGTAATATCATGTTACTAGCTAAAGGCCTGTGCATTGCAATG
GATATTATAAGAGATAAAAGCAAAAGCAAAAAAAAACATGTTTATAGCATTGTTAGTTGATTAG
GCATATAATGTCATCTCTAAAGGCAGCCATACTGAAATATACTGCTAGATCACCTCTTTTCATC
CTCTTCATCTATTTCTACAAGCCATATGGTTGGATAATACAAGATAGGACGCTTATAGTTCATC
AGTGAGTGGCAAGTAATTTGAAGGTTTTGTTTGTAACCCCTTACAATTTCTAGATTAGCAATTC
CAGGGCCATTCATGTGTTGTGAGGACCTTATGCTTATAGCCCCACATGTCAGTTTGTGGTGTTG
GAGGCAGACTTGGACACCACCAGTAGCATCATTTAAAGGAGTATAGATGTTCTAGATAAGTTCA
TACAAATGTGTTGCTGACTGTTGCATGCTTGGATATCTGCCAAACTACCTGTCTAAACAGTTGC
TTGCCTTTTATTATGCCTGACGGTGTCCCATTTGCTAATACAGAGATAGAAATGAATTTCCTGA
AACACACTATTTACACTGCCTCCGGTGATTATTTCTTCAACCCTGTATTGCAAATATGCTAAAG
AATACATTCAATTAACTAAATCCTTATCCAAAGATAGTCTACTGGGGACACAATAAAAATAGTT
TTGCCAATACCTCTTCTTTTCCATTTCTTCATCCCTGACGTTCATATTTTCCAATGTTCCATAG
GTTGTAGATGACTGGGTGCAGAATGGAGTACAAGGGCACGTTGTTTTCAAATATAAATTAAAGC
GGCTTGAGGGACAACCATCACTGACAACTTCTGAGGTATGCTTGAGCTTGGTTAAAGCTATTTT
TTTTTGAGTAAATTTCACAAAACTACATATATTTTGATCAAATTATCACAAAACTACAGATTTA
AAGTGATGTATCACAAAACTACAGATTTAGCACTAAATTTATCGCAAAACTACAGATTTAAGGT
GGAGTATCGCAAAACTACAAATTTAATAACAAAATTATCACAAAACTACAGATTTTAGAGTTTA
AATCCTTAGCACTAGTGTTATGTTTGAGTTATAAACGTGTAGGTTTTGTGATTAAATTATCACT
AAACCTGTAGTTTTGTGATAATTTTATTACTAAATCTGTAGTTTTACGATATTCTACCTTAAAT
TTGTAGTTTCGTGAGAAATTTAGTGTTAAATCTGTAGTTTTGTGATATATCACCCTAAATCTGT
AGTTTTGTGATAATTTAGTCAAAGTATCTGTAGTTTTGTGAAATTTACACTTTTTTTTTGACGG
GAAAAGGCTAAATATTTAAAACACTCAGTTGCAGCAGTATCCTTTCTTTCTTAAATTTGCTTGC
ACTGATGTACTTCTTTGAAAATAATAGTCACTTGGCTGCATTTTATCTGTTGATGAATAGCTGA
ACTGAATGAATGAATATAATGTTGATTGTCCAGGTATTTGAAATTTGAATGTGTAACCCCGAAA
AAAAATTTAGGACATGAATATATACTAATATATATAGAGATATTACAAAAGATTGGCATTTATT
AACAAGTTTGGTTACTTTTTTCACCGCTGGTGCCCCATAACATATCTACATGTGCAGGTCCGAT
TTACTCGTGCTGAAGCTCCCACCACGATTTCGGAATTACCTGGGTATATGATCGAAGCTCTAAA
ATTTTATACATTGTCCTTGAATAATCTCAAGGCATCTCAAGCTGCCTAAGCTAGCTGTTGTTGT
ACTGTGAGCTGTGCATGTTTTGTTGTACACAGATAGATTACTATGTTTGGTCATGCTTTGTTTA
TAGTGTGCCATTCTTAGTGACGCTGATATCATGTTGTATGACCTGTGCCTTGCTACTTTCTAGG
TTGGTTTGTGATGACATATCTGGTGGGCAGGAGAATCTTCCTATTCCTGCTACTAATTTGGTTG
ATGACCCACCTGTTCCTCCAACTGGTATGTTTCATATTTGTGTTTTGGCTATACATATTTTGGT
TTTACATTAGCTCTTTATGTTTTTTCCCTTAACCAGATTACTTGGCATCTTAGCATAGTATAAT
ATACTGATTTGGGATTCTTTATTAAATTCTGATTTCAGTATGATGCATGGTTGAAATATTATTG
TAAGACCCACCAAGTTTTTAATCAAATGTTTTTCCTATTTCCAAGTATTCTATATTTTTATTAG
CAACTATAGATAATACTTCATCATCATTTTTTTGTATGACATGATCTGCATATTCGGTTGTCAA
AATTCTAAATATTGAGAATTATTGAGTTTATTTACTTTATGTTTACCCTTGAAAATGGCTGTAG
GTTTTGTGTACTCCAAATCTCTAAAAATTCCAAAGGGCATCAAGATTCCATCTTATTGTAATGG
CTGTGACTGTGAAGGAGATTGCGCAAACAACAAAAACTGCTCATGCGCGCAGCGCAATGGTTCT
GATTTACCTTATGTATCACACAAGAACATTGGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021