Plant Circular RNA Database

Detail information of Os09g0453500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os09g0453500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_039452
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr9: 17009252-17010988  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os09g0453500						
					
						Parent gene annotation
						
							Spectrin repeat containing protein. (Os09t0453500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os09t0453500-01:3

General Information
CircRNA Name	Os09g0453500_circ_g.1
ID in PlantcircBase	osa_circ_039452
Alias	NA
Organism	Oryza sativa
Position	chr9: 17009252-17010988 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os09g0453500
Parent gene annotation	Spectrin repeat containing protein. (Os09t0453500-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os09t0453500-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAGCAAATTCTGTGTTTCGCATCATTTCATTCACAACAGTCATTAACTCTTGAACGGAAGCCTT
CTCTCTTTCCATCATGGTGGTTGTCCCTCCAAGTTCagatgtaccaccaaagctggatcctgaa
gctgtagctccacctaaggtagacacaggttagaatgtcatgcaatttccaaaaatcaggatat
catagcat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGATGTACCACCAAAGCTGGATCCTGAAGCTGTAGCTCCACCTAAGGTAGACACAGGTTAGAAT
GTCATGCAATTTCCAAAAATCAGGATATCATAGCATGTATAGAATAGGAAAAGATATATTTGTA
AGTTCAATTGGAAGTAGGATAAAAAGAAGAATATTGCTGGTGAATTTCAATATGGACGGTAACC
ATAGATGAGTAGAAACAGTGAAGGGCATGCACGGCAGGTGTGCCTGAGCTATATAACCCACTTG
GAAAAATAATGGACAACTAAGTGTACTCTGCTGCCAATAACAAATTTCAGTTCAGACCAAAAAC
ATAACAACAAATTTAGAGCTATGAATTGCCATGATGAAATCAAACTGTAGATGTGCCAACACTT
CAGAAATGTTTATATACCATGACGAGATCATCTAAAATGAGAATTTCACAACATAAAAGTACCA
AATTGTTTTCAGATAGCTACTGACTTATCATAAGCATATGACTATCTAACAGTTAGGAAATATA
AATATAGTATGGTGAGAGTTTGTATACCTCCGAACGGCGTAGAAAACAGTGAGGTTCCACCTAA
AGCGGGCGTTGAAGCAAAAGATGGAGTTGTATTCCCAAATCCAGATGGAGCCGGCGTTGATCCA
AGCGTTGGAGTAGAGACTGTCCCAAATGGTGTGGACAGCTGGGCTGATCCAGATGTACCAAAAA
GGTTGCTGGATAGAGTTGGAGTTGTTGGAGTTGAAAAGAGACTTGAAGAAGATGGAGCGGAAGC
TGGAGTGCTGAATGATGGAAAAGCACTTGAAGAAGTCGCTCCAGAAGGAATCAATGATTGCTGT
GGTTGACTCGTCACTGTTCCAGCAATTTGAGTTGTGGGCTGTACAGGAGCAGGCAAATGCAATG
TTGGATGTACCCTTCTGGCAGCTGCTTCTTGTTTAGCCGCTTCTCGTCTATTTGCCTCTAAAAA
TGGATCATTGGCATTACCCAATCGCCGCTGCTCATGTAGATATTCAGTTTTCAATGACTCAACA
TATTGATGAAGATTTTCCACCTAAAAAAAATACAAACATTAGAAAATACTGGGTATCGCACCAA
GGCAGTGCAGCAAGCCTAAAAGTAAGCAATCTCTCTTATTTTTTTCACGAGATACAGCTGTTAC
AAAAAAAATTTGGTTGACTTACAGATTTACATTTATTTTTATGACTATATTACATAATAAATGA
TTTATATCATGGGGGAGAACCTCAAAATAAATGCATTTTAACAGTTCAACTGCAGTGTGTGTAT
GAAAAAGGAGATTTACCTTAGAAGCAACATAGATGAAATAATCATGCACATTCGACATAACCTT
CGGTAGAGATTCTAATGAGGCTGATTGCCTTTTATTGTTCTCCATTTGAACAAGCTGCTCTAGC
TCCGCGATCCACTTGCAGCATTCTCCAAGATATTTCTCAAACCTGTTGATAGTCTGTTGCATAA
AATGGGAAGGCCGCTTTGGGATACCACTATAGAAATCAATGGTTGGAGCCAATGCTACTGGCTG
ATTGGACTGAGCTCCAGCAGGACCAGAAGGATTTGAGCCACCACCATTTGCTCCAGCACCTGGA
CGGATAAATCTTGGTCTCAGCATCATATATGACCTAATAGCAAATTCTGTGTTTCGCATCATTT
CATTCACAACAGTCATTAACTCTTGAACGGAAGCCTTCTCTCTTTCCATCATGGTGGTTGTCCC
TCCAAGTTC
						
					

			
		

Sequences
Splice junction sequence	TAGCAAATTCTGTGTTTCGCATCATTTCATTCACAACAGTCATTAACTCTTGAACGGAAGCCTT CTCTCTTTCCATCATGGTGGTTGTCCCTCCAAGTTCagatgtaccaccaaagctggatcctgaa gctgtagctccacctaaggtagacacaggttagaatgtcatgcaatttccaaaaatcaggatat catagcat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGATGTACCACCAAAGCTGGATCCTGAAGCTGTAGCTCCACCTAAGGTAGACACAGGTTAGAAT GTCATGCAATTTCCAAAAATCAGGATATCATAGCATGTATAGAATAGGAAAAGATATATTTGTA AGTTCAATTGGAAGTAGGATAAAAAGAAGAATATTGCTGGTGAATTTCAATATGGACGGTAACC ATAGATGAGTAGAAACAGTGAAGGGCATGCACGGCAGGTGTGCCTGAGCTATATAACCCACTTG GAAAAATAATGGACAACTAAGTGTACTCTGCTGCCAATAACAAATTTCAGTTCAGACCAAAAAC ATAACAACAAATTTAGAGCTATGAATTGCCATGATGAAATCAAACTGTAGATGTGCCAACACTT CAGAAATGTTTATATACCATGACGAGATCATCTAAAATGAGAATTTCACAACATAAAAGTACCA AATTGTTTTCAGATAGCTACTGACTTATCATAAGCATATGACTATCTAACAGTTAGGAAATATA AATATAGTATGGTGAGAGTTTGTATACCTCCGAACGGCGTAGAAAACAGTGAGGTTCCACCTAA AGCGGGCGTTGAAGCAAAAGATGGAGTTGTATTCCCAAATCCAGATGGAGCCGGCGTTGATCCA AGCGTTGGAGTAGAGACTGTCCCAAATGGTGTGGACAGCTGGGCTGATCCAGATGTACCAAAAA GGTTGCTGGATAGAGTTGGAGTTGTTGGAGTTGAAAAGAGACTTGAAGAAGATGGAGCGGAAGC TGGAGTGCTGAATGATGGAAAAGCACTTGAAGAAGTCGCTCCAGAAGGAATCAATGATTGCTGT GGTTGACTCGTCACTGTTCCAGCAATTTGAGTTGTGGGCTGTACAGGAGCAGGCAAATGCAATG TTGGATGTACCCTTCTGGCAGCTGCTTCTTGTTTAGCCGCTTCTCGTCTATTTGCCTCTAAAAA TGGATCATTGGCATTACCCAATCGCCGCTGCTCATGTAGATATTCAGTTTTCAATGACTCAACA TATTGATGAAGATTTTCCACCTAAAAAAAATACAAACATTAGAAAATACTGGGTATCGCACCAA GGCAGTGCAGCAAGCCTAAAAGTAAGCAATCTCTCTTATTTTTTTCACGAGATACAGCTGTTAC AAAAAAAATTTGGTTGACTTACAGATTTACATTTATTTTTATGACTATATTACATAATAAATGA TTTATATCATGGGGGAGAACCTCAAAATAAATGCATTTTAACAGTTCAACTGCAGTGTGTGTAT GAAAAAGGAGATTTACCTTAGAAGCAACATAGATGAAATAATCATGCACATTCGACATAACCTT CGGTAGAGATTCTAATGAGGCTGATTGCCTTTTATTGTTCTCCATTTGAACAAGCTGCTCTAGC TCCGCGATCCACTTGCAGCATTCTCCAAGATATTTCTCAAACCTGTTGATAGTCTGTTGCATAA AATGGGAAGGCCGCTTTGGGATACCACTATAGAAATCAATGGTTGGAGCCAATGCTACTGGCTG ATTGGACTGAGCTCCAGCAGGACCAGAAGGATTTGAGCCACCACCATTTGCTCCAGCACCTGGA CGGATAAATCTTGGTCTCAGCATCATATATGACCTAATAGCAAATTCTGTGTTTCGCATCATTT CATTCACAACAGTCATTAACTCTTGAACGGAAGCCTTCTCTCTTTCCATCATGGTGGTTGTCCC TCCAAGTTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.153955153

Conservation Information
Conserved circRNAs	NA
PMCS	0.153955153

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							17010967-17010086(+)
17010969-17009254(-)
						
					

						Potential amino acid sequence
						
							MVVVPPSSDVPPKLDPEAVAPPPNGVENSEVPPKAGVEAKDGVVFPNPDGAGVDPSVGVETVPN
GVDSWADPDVPKRLLDRVGVVGVEKRLEEDGAEAGVLNDGKALEEVAPEGINDCCG*(+)
MMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIRPGAGANGGGSNPSGPAGAQSNQPVA
LAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELEQLVQMENNKRQSASLESLPKVMS
NVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNANDPFLEANRREAAKQEAAARRVHPTLH
LPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSFSTPASAPSSSSLFSTPTTPTLSSNLFG
TSGSAQLSTPFGTVSTPTLGSTPAPSGFGNTTPSFASTPALGGTSLFSTPFGGGATASGSSFGG
TSELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIRPGAGANGGGSNPSGPA
GAQSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELEQLVQMENNKRQSAS
LESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNANDPFLEANRREAAKQEAA
ARRVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSFSTPASAPSSSSLFSTPTT
PTLSSNLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFGNTTPSFASTPALGGTSLFSTPFGGGA
TASGSSFGGTSELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIRPGAGANG
GGSNPSGPAGAQSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELEQLVQM
ENNKRQSASLESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNANDPFLEANR
REAAKQEAAARRVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSFSTPASAPSS
SSLFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFGNTTPSFASTPALGGTSL
FSTPFGGGATASGSSFGGTSELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRF
IRPGAGANGGGSNPSGPAGAQSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWI
AELEQLVQMENNKRQSASLESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNA
NDPFLEANRREAAKQEAAARRVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSF
STPASAPSSSSLFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFGNTTPSFAS
TPALGGTSLFSTPFGGGATASGSSFGGTS(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	17010967-17010086(+) 17010969-17009254(-)
Potential amino acid sequence	MVVVPPSSDVPPKLDPEAVAPPPNGVENSEVPPKAGVEAKDGVVFPNPDGAGVDPSVGVETVPN GVDSWADPDVPKRLLDRVGVVGVEKRLEEDGAEAGVLNDGKALEEVAPEGINDCCG*(+) MMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIRPGAGANGGGSNPSGPAGAQSNQPVA LAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELEQLVQMENNKRQSASLESLPKVMS NVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNANDPFLEANRREAAKQEAAARRVHPTLH LPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSFSTPASAPSSSSLFSTPTTPTLSSNLFG TSGSAQLSTPFGTVSTPTLGSTPAPSGFGNTTPSFASTPALGGTSLFSTPFGGGATASGSSFGG TSELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIRPGAGANGGGSNPSGPA GAQSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELEQLVQMENNKRQSAS LESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNANDPFLEANRREAAKQEAA ARRVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSFSTPASAPSSSSLFSTPTT PTLSSNLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFGNTTPSFASTPALGGTSLFSTPFGGGA TASGSSFGGTSELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIRPGAGANG GGSNPSGPAGAQSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELEQLVQM ENNKRQSASLESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNANDPFLEANR REAAKQEAAARRVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSFSTPASAPSS SSLFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFGNTTPSFASTPALGGTSL FSTPFGGGATASGSSFGGTSELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRF IRPGAGANGGGSNPSGPAGAQSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWI AELEQLVQMENNKRQSASLESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNA NDPFLEANRREAAKQEAAARRVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSF STPASAPSSSSLFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFGNTTPSFAS TPALGGTSLFSTPFGGGATASGSSFGGTS(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os09g0453500_circ_g.1

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