Detail information of AT3G02600_circ_g.2


General Information
CircRNA Name AT3G02600_circ_g.2
ID in PlantcircBase ath_circ_019355
Alias 3:553793-553981
Organism Arabidpsis thaliana
Position chr3: 553793-553981  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G02600
Parent gene annotation Putative lipid phosphate phosphatase 3, chloroplastic
Parent gene strand +
Alternative splicing NA
Support reads 1/1/2
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G02600.11:1
AT3G02600.1:1
AT3G02600.8:1
AT3G02600.5:1
AT3G02600.4:1
AT3G02600.9:1
AT3G02600.12:1
AT3G02600.6:1
AT3G02600.3:1
AT3G02600.7:1
AT3G02600.2:1
AT3G02600.10:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACTCCCTTTGCTATTTGCAGCTCTTGTCGGCATTTCCCGTGTTGATGACTATTGGCATCATT
GGCAAGACGTCTTTGCAGGAGGCTTGCTAGggtctttttcgggtctcggatttctttcgcttta
cttatcgggaaagattcaagcatttgacggtaaaggccacgttgcaaagctatgcatagtc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 189
Transcript exons: 553793-553981
GGTCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTCAAGCATTTGACGG
TAAAGGCCACGTTGCAAAGCTATGCATAGTCATACTCCCTTTGCTATTTGCAGCTCTTGTCGGC
ATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAG

Genomic sequence GGTCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTCAAGCATTTGACGG
TAAAGGCCACGTTGCAAAGCTATGCATAGTCATACTCCCTTTGCTATTTGCAGCTCTTGTCGGC
ATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.517009441
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020