Detail information of Os01g0534900_circ_g.12


General Information
CircRNA Name Os01g0534900_circ_g.12
ID in PlantcircBase osa_circ_002032
Alias Os_ciR3256
Organism Oryza sativa
Position chr1: 19398402-19403270  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os01g0534900
Parent gene annotation Similar to Hv711N16.16 (Fragment). (Os01t0534900-01)
Parent gene strand -
Alternative splicing Os01g0534900_circ_g.2 Os01g0534900_circ_g.3 Os01g0534900_circ_g.4 Os01g0534900_circ_g.5 Os01g0534900_circ_g.6 Os01g0534900_circ_g.7 Os01g0534900_circ_g.8 Os01g0534900_circ_g.9 Os01g0534900_circ_g.10 Os01g0534900_circ_g.11 Os01g0534900_circ_g.13 Os01g0534900_circ_g.14 Os01g0534900_circ_g.15 Os01g0534900_circ_g.16 Os01g0534900_circ_g.17 Os01g0534900_circ_g.18 Os01g0534900_circ_g.19 Os01g0534900_circ_g.20 Os01g0534900_circ_g.21 Os01g0534900_circ_g.22 Os01g0534900_circ_g.23 Os01g0534900_circ_g.24 Os01g0534900_circ_g.25 Os01g0534900_circ_g.26 Os01g0534900_circ_g.27 Os01g0534900_circ_g.28 Os01g0534900_circ_g.29 Os01g0534900_circ_g.30 Os01g0534900_circ_g.31 Os01g0534900_circ_g.32 Os01g0534900_circ_g.33 Os01g0534900_circ_g.34 Os01g0534900_circ_g.35 Os01g0534900_circ_g.36 Os01g0534900_circ_g.37
Support reads 3
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os01t0534900-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGGCACTCAGTATGTTGATAGCTGCAGAGACACCTATATCTTGAATAGTAGCCATATTTGTC
CTTCAAATAACTTGCGAGAATTACTACAGATGCTAGtcatttgctgattggtgaagaaatgttt
tgagctgctctaaagcagatcctgcaataatgcttcccaagaatacattaaagaacaagaagat
atagtact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCATTTGCTGATTGGTGAAGAAATGTTTTGAGCTGCTCTAAAGCAGATCCTGCAATAATGCTTC
CCAAGAATACATTAAAGAACAAGAAGATATAGTACTTAAAAGCAGATCTCCTCTCCAGTGAGGA
CACCGATGTCAATCCTTCAACTTTAGACATAAACATTAATATGCTAGGGAGCAATATAAGGAAA
ATCTTCAGAGCAATTCCTGGCAGAAATCCTTGGATGAATGATTTAATAGTACGCCTGGGCAATA
GTTGAAAAGAAAAATTGACATAAGTGAAATGACAAATCAACAACAGAAGAATGTAGAAGAAAAA
AGTAGTAAATCAAATGTAAAGTTTATGAACTTGTCTATTTAGGGCATTAGGTGCTCAAAGATAT
ACTTTGGCTTGGTAGGTTCCATGACTTGCTTGCTCCTCAAAGTGGTACATTAATGGATAAGTTG
TGAGATTGGTAGATTGCCAAAACATTTTCATAATAGAGGAAAAATAAGATGCAAAAAACAGTAT
TGCTTAGCATCAACCATTCAATGGACAGATTTCAGCAAGTACTGGATCAGGTGTATAGAACAGA
CTTTAGCTGCACTAGAACATCAAGTTATTGATGGCCACAGGCAACAAAGCAGGTGCAAAAGCAC
AACTGATATAATGCTAATTAATTTCATTCTAGCAAGTTTCAGTTGTATTTCCAAAAGAAAGCAA
GAATGAAATGTTAACAAACAATAAATTTGCAATGACTGGAAATTCACAAATTATGTGCCAAAAT
ATATAACAGAAATACATCTGTAAAGAGTGCACAGTGCAGCAGGACTAAACCCCTTCATAGCATC
CAAGCCATGTTTTCAATTCTTTAACAGTAAGTTCAAGTTCAACCGTGATTTCATGCATACATTT
CCTCAGTTTCATTCGGTAGGAAAAAGCCTCTGTTACCTCTGCATGATATTTATCTTGAAGCTTA
CTTAAAGCCTTAAAGGACAACTGACCCTATGATATCTTGAAAGGATTTGATCATCAAAAGTTAA
CAAAAATATATTTTATCATTTTTTTTCTGCAATAACATTCCTTGCAAGTTGCAACCCACACAGA
AGTCTAATTTATTACATGGCAGTAGCACTTAAATCATATATTGGATGATGATAAGATCATAAAG
CCATGTTCTGAAAATCCAATACTAGAAAAGCAGTATGTGGTAAGCTTTCAACTGAAAAAAAAAA
TTGAGGAACAACTGATAATAATTATTGCAGAAGAAAGAGATAAATGCACGTACATTTCAATCAA
AGGCTTCAGAAATGGAGCTGCCTTCTCAATCCCTTCAATATTTGCAAGGGACTGAACAAATGCA
ATCGGGAGCACATAAAAGAAGTTCAGGAAGAAGAATGCAACCGCAATTATCAGCCTCCTAATTG
TCAGGTAAACAAAAGGAATAGAGAGGTTATCCCAATAGACATCACGAGGTTCTGGGGCCCACTC
GGTCAACCAGACAGTTGGATTACTGGTTTGCTGTGTCTGAGCACACACTGCTGCTCCCCACCGC
GATCGGAAGGAAACAAAGGCTGCTGGCACAACTGATTTTGGATCCTTCATAATCTTTCCACGTT
CATCAGTTTCCTAAATATCATTTATAAGAAGTTAATCCGGTGGTTTATGGTACTGGGGAAATCC
TTTTAACATGTGAAACACAACATTCAACTTATACAGTGCTAATTACTAATAAAAGCTAACACAT
ATTTGCCAATATTGATGGATGCAAAGACAAGAAAGAAAGACACTATTTGCTTCAGTAAAATAGC
AAGAAGCTTTACTTTTGTTAAGACACTATATGAAGTCAACTGTAGTATTTTGAAATAACACTAG
ACTCAAAGCAGAATAATGCATTAGGAGGCACAGCACAAAGATATTATGACTTACTTCCTTTTCT
ATCCTCTCAATTTCAGATGTGTAGTATTCAATAGCATCCACCTTTGAACCAAAACATCCAAGAA
AACCAGTCTGGAAAAGAAGTATAGAAAAATAAGAAGAATAAATAAGGAATCATAAATAAAAATT
ATTCTTTTTTGTTTTGATAAAAACAACAAGAACTGTGTAAGAGAAGTAAAGAGATTAACATGAT
CAAATTTAGCAACAACCTTTGTAGTAGGCCTTTGAGATGTATTTCTTTCATATTTCAGCTGATA
GTAATCAAGCCAATTCTGCATTTTCTTCTTCTCTTTGACCATCTTATCAAGCTTATTTGCATTA
TAGACAACCTATACCAGTCCATGAAATGAATGATAAGAACATGGTAGTGGTAAGCCATATCAGA
GCATAGATTTTTTTTTTTTAGTAACGATAAGCAGTTAAAACTAAGGAATCAAACAGAACTACAT
TTGATTGCAGAAAGATAAAAAGGAAAGGCATATATGAAAGAAGTTAATGGCATATAACTATTCA
CATGACTTCGCTATGAACTTTGAACTGACCAGACAGAAAGATCCAGTGAAGCATAAATACCAGA
CTGTAAAATATAAATATTACCTGGTGCGTAAGATAATGGTCAGGATGGTTTACAAGGAAGAAAT
GTTCCACAAGCTCACCAATTGATTCATCAGGATCAGGCGGTATATTCCGCACAAGGACCTAAAA
ATCAACATTGGTCAATTAGTATATCATTGCTCTTCAGTCATAATCAGTTACAAAATCTTCCTTC
ACCAGAGGCTTTCCAATTTTAAAGATGAGTTCTCCCACCAACCTATCTTGGTTAGCCACATTCA
GCTTAGTTAAATATCTGGATAGAACCAGGTACTTGCAAGTTCAAAAGTCACATTAAAAATTATA
CCCAGTTGGCAGTTGAAACTATTGGTGCCCTAACTAATTCGTCTTTTCTTTTGGATAGAAATCC
ATTTCTTAGAGCATCTATAAGAATAAACAGTGCAAACATACCTAACAATTTTCATTTTACAGAA
TGAGCAGTATACAGCAAGCATTCAATAATGATACTTTTATGGTTTTGATGTCAACAACTCAATG
TCCATAACATTTCAAGAATAGTGGTTTTCATGATTATCTTTTTTATCAGCTGATATTTTACATT
ATTCAAGTTCCCACGTAGTCCCTCAATCACTATCCATGAGGTGAAGCTTTTTTGTCTTCCATAG
ATGTGTAAAAAGACTTAAGTGGCATTATTAGATTCATTGTGAAATGAACACTGTTAGTGACATG
ACATGCTATGAACTAAGTAGAATTGGAAGGCACATTAGAAAGAAAATATCAAGTAATATAAATT
GAACTGCCAAATGCATAGAGTTCACAAGATCATACCGTGAACTGATCTGGGCGGCGCTTCTCTG
ATGCAAGAAAGCGCAGACGCATTGTTGCCACTATTTCATACTCCCGTAACAGCACATAGCATGT
CCAAAATGTGAAAACATAAGCCATGGTCAGGTGAGCTGCGAACCTGCATTAAAAAAAAGTCACA
GGCATAGTGAACACTAAAACAATAGTTTCAGAGTTGATGAACAGGGTATCCTGCAAGACTAATG
TGCTGCCTGGAAGGCTAATATCAACTATAACCACTCACCTACTTATCTATGGCAAGATCAAACC
TTTGCGACTATTTGTCTAATTACTATTACAAAGTATCACACCAAACTGACACAACAAGCTAGGT
TAAAATTAATGGCCTTCAGAATTGCACACCCCACACATGCAAGCTACTACCGTTTCTGACTCCC
AGCTCATGTATTATCACAGAGGCTGGGTGGTTGTTCATACTGCATGGTCATCTCTATACATCTT
CGGATCTTCATGACTTTCCTAAGCCCAAATGGGGAAAGAAAGTAAGAGCAATCATCATTCCACT
TACCATTTGAACCAACCCCATACTCACTATCTTAAATTGTGTTTGAAGTAATCTATCAGGCATG
CCCATATTTTAGCCAAAGATGGTACACAACATTAACAGTAATATGTAGGTATATTACTATATTT
TAAGACAGAAAAATTATCTGGTACTAACCTCTTTGACCCTACAGGTATGTTGGATATTGAAAGT
TTGTCAATATCACTGTGCTGCACCTTCGAGCTTTGAAGGGTAATATTGGTCCAATTAACAGGCA
CAAGAATAATAAATGCTAGAACTGTGATTGGAGCAAATATTTTAAGCCTGCAACAGTTAATAGT
AAAGGAGATTAGTGTAAAAGTATTGGCAGAGAAAAGTAACAGAGATGGGAGATACCCAGTGGAT
AAAACAGAAACATTCAACAAAACAACATTTTCGGTACTAGAAGTACACTTCTACATATGTAAGA
AATGGAGAAATAGCAACGATTTAGAATCCATAAAAATATAAGACAATTAAAATGAATAGTATGT
AAATATTAAAATATGGTCCAACACTAGAGCCCTTCCCTTCTGTCAAGGAGAAAACCTGAAAGCT
AAACCCCCCCCCCCCCCTCCCTTAAATATATGTCTGACCTAAAGTATAATTGACGACTTAAAAA
GTTAGCAGAATTTATGAATATAAATTGCATACCCTATTAAGTAGATCCGCAGATAGACAGCTGA
ATCAAGGCCTGCATGGCTAATTAACTCATCCTCTGGCATTTTGAGAGCAGCAGGCATCCAACTT
AAGACCTTCAAGTATGATCGCATGTCCAAATTGACAAACTTCCGCACAAATGCACCCCCATGAC
TTGGACTCTCTCTTGCACCTTTGAGATACCACTTTGGGAAGTAAACCCTATCGTTGATGGGCTG
TAGTCGCAGGAAAGCAAACGCTAGCAGGAAAGTGATGGCACTCAGTATGTTGATAGCTGCAGAG
ACACCTATATCTTGAATAGTAGCCATATTTGTCCTTCAAATAACTTGCGAGAATTACTACAGAT
GCTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.109640325
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015