Detail information of EPlOSAG00000000476_circ_ig.2


General Information
CircRNA Name EPlOSAG00000000476_circ_ig.2
ID in PlantcircBase osa_circ_020975
Alias Os03circ22679/Os_ciR207
Organism Oryza sativa
Position chr3: 27106437-27107773  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000000476_circ_ig.1 EPlOSAG00000000476_circ_ig.3
Support reads 5/266/26
Tissues leaf/root/shoot, root, seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: CATCAACGGGAGCCAGAAGA
R: CCTCAAGTCAACACGGAGCA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACA
AATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAGgtttttgattttgatcgggattacaaag
acattggtgttggtcgatttacaactaaatgctttgaagtgaggaattgtatatccaatgccaa
atgtgcta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 168
Transcript exons: 27106437-27106456,27107626-27107773
GTTTTTGATTTTGATCGGGACAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTT
CTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTC
AACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 173
Transcript exons: 27106437-27106547,27107712-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTCAGGTATAAACGTATCC
ACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 174
Transcript exons: 27106437-27106456,27107620-27107773
GTTTTTGATTTTGATCGGGAGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTG
TTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATC
CACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 179
Transcript exons: 27106437-27106508,27107667-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAAC
GTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 180
Transcript exons: 27106437-27106544,27107702-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGCCTGGAAGGTCAGGTATAAA
CGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 189
Transcript exons: 27106437-27106549,27107698-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGCTTCCTGGAAGGTC
AGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 193
Transcript exons: 27106437-27106521,27107666-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAA
GGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACA
G

Transcript length: 196
Transcript exons: 27106437-27106552,27107694-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGATGAGCTTCCTG
GAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTC
ACAG

Transcript length: 196
Transcript exons: 27106437-27106556,27107698-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGGAACGCTTCCTG
GAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTC
ACAG

Transcript length: 202
Transcript exons: 27106437-27106456,27107592-27107773
GTTTTTGATTTTGATCGGGAAGGAAGTTTGGAGGGTTTCAACATCAACGGGAGCCAGAAGAGCT
AGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGC
TTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGA
CAATTCACAG

Transcript length: 210
Transcript exons: 27106437-27106503,27107631-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTATTCTGTGAGAGA
GCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAA
GGCAGCGACAATTCACAG

Transcript length: 214
Transcript exons: 27106437-27106502,27107626-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AACAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTATTCTGTGA
GAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTG
GCAAGGCAGCGACAATTCACAG

Transcript length: 215
Transcript exons: 27106437-27106544,27107667-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGCTTCTACTAGCTATTCTGTG
AGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTT
GGCAAGGCAGCGACAATTCACAG

Transcript length: 219
Transcript exons: 27106437-27106508,27107627-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTATTC
TGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCC
AGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 220
Transcript exons: 27106437-27106476,27107594-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGAAGTTTGGAGGGTTTCAACATCA
ACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTATT
CTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTC
CAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 221
Transcript exons: 27106437-27106507,27107624-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTAT
TCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCT
CCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 222
Transcript exons: 27106437-27106508,27107624-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTA
TTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTC
TCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 227
Transcript exons: 27106437-27106508,27107619-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGCGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACT
AGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAA
ATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 242
Transcript exons: 27106437-27106506,27107602-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGAGGGTTTCAACATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGAT
GCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACG
TATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 243
Transcript exons: 27106437-27106508,27107603-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAGGGTTTCAACATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGA
TGCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAAC
GTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 245
Transcript exons: 27106437-27106509,27107602-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAGAGGGTTTCAACATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCT
GATGCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAA
ACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 245
Transcript exons: 27106437-27106514,27107607-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTTTTCAACATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCT
GATGCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAA
ACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 253
Transcript exons: 27106437-27106549,27107634-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCCTAGAAGAATATCTA
CTGGTGCTGATGCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTC
AGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 254
Transcript exons: 27106437-27106555,27107639-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGGAAAGAATATCT
ACTGGTGCTGATGCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGT
CAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 264
Transcript exons: 27106437-27106550,27107624-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGGCCAGAAGAGCTAG
AAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTT
CCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACA
ATTCACAG

Transcript length: 270
Transcript exons: 27106437-27106550,27107618-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGACGGGAGCCAGAAG
AGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCAT
GAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCA
GCGACAATTCACAG

Transcript length: 280
Transcript exons: 27106437-27106552,27107610-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGCAACATCAACGG
GAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTATTCTGT
GAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTCTCCAGT
TGGCAAGGCAGCGACAATTCACAG

Transcript length: 286
Transcript exons: 27106437-27106556,27107608-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGGAACTTCAACAT
CAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCTA
TTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGTC
TCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 287
Transcript exons: 27106437-27106568,27107619-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGGAACACTCCTCC
TGAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAGCT
ATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAATGT
CTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 289
Transcript exons: 27106437-27106550,27107599-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTTGGAGGGTTTCAA
CATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCTTCTACTAG
CTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTTCAACAAAT
GTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 297
Transcript exons: 27106437-27106552,27107593-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGGGAAGTTTGGAG
GGTTTCAACATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGTTGCT
TCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCCACTT
CAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 301
Transcript exons: 27106437-27106554,27107591-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGGAAAGGAAGTTT
GGAGGGTTTCAACATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATGCTGT
TGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGTATCC
ACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 305
Transcript exons: 27106437-27106564,27107597-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGGAACACTCCTCC
GTTTGGAGGGTTTCAACATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGATG
CTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACGT
ATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Transcript length: 306
Transcript exons: 27106437-27106560,27107592-27107773
GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGGAACACTCAGGA
AGTTTGGAGGGTTTCAACATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGGTGCTGAT
GCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGTATAAACG
TATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG

Genomic sequence GTTTTTGATTTTGATCGGGATTACAAAGACATTGGTGTTGGTCGATTTACAACTAAATGCTTTG
AAGTGAGGAATTGTATATCCAATGCCAAATGTGCTACATTGTTGTCTGCGTGGAACACTCCTCC
TGAAAAGTAAGGACCAGTAAACGTCTCGCATTCTGTTCACTTGCTTCTTCTGGTTGTGAATGAA
TTCTTTCATGAAATGGGATTCCAGTGAAGACTATTAACTGAGTTCTACTTACAGAGGTGTCATG
CTCCGTGTTGACTTGAGGCAAGGCGCTCCGAAGGATGGAAATTCTCCAGTTGATCTCTTTGAGC
TCTTTCAGGTTGCCTTGACTTGAAACAAATGGCCAATTTGTGACTTTATGTATTTCATTCATTA
TTTTTGCCCCCTGGTAAAACCAATTAAAATTGGTGTGAAAAGTTATAGTACTTATCATGCTATT
TCATTCATTATTCATTTCATTGACTATTTTTTTTCTTTCGATTGCTATGAAGAAGCGTTGTTTC
TACATGCTATCACAAAATAACTGTTAGGCTCTTCCCAAATGCAACTTGTGATCACCAATTTTTC
TTTTTGCAATGCGTACATATGGGTTTCAGTTCTCTGATGTTCATACTCAATATTAAAATGATTT
GACTGCACGCATGCCACACTGACTCTTTTGTGTGTAATAGGAGTATTTAATGTTGGACTGTTGG
TTGCAATAATTTTATTCTGGTTTTCAGTTATTACATGCAGTAATATTATGCTGGTTTTCAGTTA
TTACATAGCTATAAGATCTACAGCATTCCATTGTTCTGCTGGAAGCCAAGTCTTTGTTTGGAAT
GCAGGGAACTTAATTGTTTTCTGTGGAAATTGAACTGTTCTCTGTGAAATTCCTGTGTTCCTTA
TGGGGCCAGCAATGTAAAATGATCTGTGTACTGCTACTGACTAGTCATTTGTTCTATTTACTCT
TGAACTTTGCAGGTGGAGATACATCCACTGAAAATTTATCTGTCCGAAACAATGTACAGAATGA
TGTGGGATTATTTCTTTCCTGAGGAAGATGATTCACAAAGGCGTCAGGTAAGCCAGAAATCATG
CTCTCTCACATTCCCTACATCTTGTCTTCGTCCACTCATCATCTCTGATATACTTTTGTTGGGA
GAAAGGAAGTTTGGAGGGTTTCAACATCAACGGGAGCCAGAAGAGCTAGAAGAATATCTACTGG
TGCTGATGCTGTTGCTTCTACTAGCTATTCTGTGAGAGAGCATGAGCTTCCTGGAAGGTCAGGT
ATAAACGTATCCACTTCAACAAATGTCTCCAGTTGGCAAGGCAGCGACAATTCACAG
Conservation Information
Conserved circRNAs osi_circ_005021* osi_circ_013428
PMCS 0.757142719
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA