Detail information of Csa1G050430_circ_g.1


General Information
CircRNA Name Csa1G050430_circ_g.1
ID in PlantcircBase csa_circ_000198
Alias Chr1:5908564_5911782
Organism Cucumis sativus
Position chrChr1: 5908564-5911782  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa1G050430
Parent gene annotation NA
Parent gene strand -
Alternative splicing Csa1G050430_circ_g.3
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-GC
Number of exons covered Csa1G050430.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATGCTTACAACGCGCAATTGATTAAGATTTCCCTTCATTTTAAGAGTTTCAGAATCTCGTTC
TAACTGGTGCTTCCATGATACAAGAAGGCCCTCATCctttttttccttctccaatatctcttta
attggacggtgagcagcagcaacacaaagattctgtcataaaacataagtaaatgaataagact
ccgttgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTTTCCTTCTCCAATATCTCTTTAATTGGACGGTGAGCAGCAGCAACACAAAGATTCTGT
CATAAAACATAAGTAAATGAATAAGACTCCGTTGTAAAACCTTTTTTTTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATTTGTTCCAA
GAGGCCAACCATCAATAGAAAGACAGAAATGGTAGAGTATACCTTAAGGTCACTCCCAGAGTAT
CCATCTGTCATACTAGCAACCGAATCAAAATCAAATTCTGGAGACAAATCTTCTTTGGCCAAAA
TAACTTTAAGTATCTTTGCTCTATTTGGAGCGTCTGGCAAATTCACCATCAACCTGCAGATGAA
ACAAACTGAGAATCTTCTACTAATGAATGATACTAGCACGATAAAATTAAAATATCACAAGGGG
ACCATGTCTTTCTCCCATGACATGAACAGAGCAATAGCATGCTCTGAATTCGCACTTTTTAGGT
AACTGTTTTTACCTACGAGGAAGCCTTCGAATAACAGCTTCATCAAGGTCAAAAGGTCTGTTTG
TGGCTGCAAGAACCAGAACCCTTTCTGTGTCCTTTGTCCGCAAACCATCCCAGTTCACCATAAA
TTCATTTTTCATCTTTCGCATGGCCTCGTGTTCTCCTGGATTTTCTCTTCGACCCAACATGCTG
TCAACCTAATGAATTACCATCAATTAGAAAAAGAAAAGTCATGGTGAATAACCTATAACAGTAG
GAATGACTGATAGGCAGAGGAGATGAGAGGTTTACTTCATCAACAAATACAACACTTGGGGCAA
TTTTACTGGCTAGAGAGAAAACAGCTTTTACATACTTCTCACCCTCACCAAACCACTGCAAAAA
GAAGGAATTTGTAAATCATAGAACAATGGGGTAATAAACCACAACTGTATATGTGAAAGTTGAA
ATCTATAACAAGTATTTTTTCTGTCTACCTTTGATGTAATGCTTGACATGGAAATGTTGATAAA
ATTTGCACCAGCTTCAGTAGCAACGGCTTTTGCGAGCATCGTCTTACCTGTTCCAGGTGGGCCA
AATAACAGAATGCCTTTGCATGGCTTCACATACAATAATAGCTAGTGAGATTCTTCCACCCAAC
AAGATTTCGTTACACAACCAAGCTATATGGCAGGTGTTAGAAAAAGATTCAATTTCTGAAGTGC
AATAATGACAAGCAGATATTTAAACCAACTAAAAGAAATTAAGATTGTAGTAACATGATACTCG
AGAAAATTTTCCTCTAATTGACATTCATTTCTTTGTTTTTTCCTTGGGGAGCTTTCCTGGGTGG
CATTAGTGCCTATAATAACGTACAAGTAAGAAACAAATCCTTATTGTCATCTTCAGCCCAATTC
ATTCACTCTCTATAGAAGATCTGCTAAAGAAGTCAATTATATGTTTACATACTATTTCCCTTGT
AGCTTTTGAAGTACAATTAGCCTTCTTTTGTTCAGGACAAGACTAGTCAATTCTTAACCCTCCC
CCCTCAGCAATATCGACTTCAAAGACCAGGTCAAGGATCTTTACTTAAATGCTTGGTAGGACAG
AAATTTGTTTCAAGATGATTGATTTGGTTGGATATTCAGGATATCATACACATTTAAGTCCTCA
AAACACACTATTGATCTGATATGTCCATGAATAGTCTTTATCTAATGTTGCTAATTATGTCTCT
CTCGAGACTACCAGCTTGGTGCTAGAAAAAGCAAGTGAAAAGTTCCTAAGAACTTTCACAATAT
GTATTAAGAACTTTCACAATATGTATTAGCAAAATACATGGGAGTTGGGGATGAAAAAAAGTTA
GCACCACATAGCTGTGGGCCAGCTCCATTTCTGTCTTGGTGGTTACAGGAGCAAAAACACTAAC
AAGAGGTGTATTAGTAGAGTATTACAATCAAGAAGGAATCTGAAGGTGCCAAACTCCCATCTTA
ACCTAAAGCTGACTCAGAGTTCATTTCTATCTACCTGCCCTGTTATGTATAAAATTAGCATTTA
AAACTAATTAGTACAAATTATACAATTACAAACTGAACTGTCAGTTAAAGTTTTAAAAACTGCA
TTAAAAAAGGAGATGAAATGAAATGAGCATCAAAGAAAAAGATGAGAAAAACCAAATTACAATC
CATATGGTAAAGGAAAAAAGAACGTGAATGGATATCCATTGATTTCACCAAACTAAAAAGACAT
TATAAGAACCAAAATATATATTTCTTTTTACTTGTACCTTAGTCAATTGCCCCTTGCAAAAAAG
TTCGGGCCTTTGTAAAGGAAGCATCACCAATTCCTTTAGAGTATCCTTCACATTTTCAAGAGCT
CCAATATCATCAAATGTGACTCCTATATCACTAGGTGGGATAACGTCTGCTAAAAGCCTTTTCT
CAAATTCATTCTCTGTAACAACATCCTAAGTTTACAAAAAGAGTATGGAAAGTATTAACATAGT
TAACCAACAGAGTTATTGTCAAAACTTGACTTAAAAATTAAATGAAATGGGAAAAGAATAAATT
TTGACTAGAGAGCCAACAGCAAGAATTTGCAATTGAAACCTTAAGCGACTTCTTCAAGCTCTTA
GATTCATTCTGGATAGCCTGTAAGATACTGATCCCGTATTGAATGCTGCAAAAATTGCAAAACA
GAATTACAACTGCAATTAGATGGACAGATGTAGCAGAAAGAAGTACATCCAAAAGGGAAGCAGG
AAGAAAGTTAGGCAACCTCTCACTAGACAAAAGTACTCTAGAATCAGGATCGGCTTCTAGATTC
TGCATTAAATGATGGCTTAAGGCCCATCCAACTACCTTCTCCGCACCTGCAATAGAGGAGAAAG
TAGCACTCGGTAATGAACTATGTTAACAGCAATTGGTGTGATTTCATAAAATTGGGTCATAACT
CACTCTCATTCGTAAGTGTTTGATCTTTGATGCATAAAGTCTCTAAACCTTCACAATCCATTCC
ACTCCTACTCAAAACCTGCTTTTGAAAACGTTGACCATGAGATTGAAGTCTTAAAACACTACAA
CAACAAGGCCAATGCATGTTTTTATCCAAAATTTAATGAGTAAAGGAAAATGCTTACAACGCGC
AATTGATTAAGATTTCCCTTCATTTTAAGAGTTTCAGAATCTCGTTCTAACTGGTGCTTCCATG
ATACAAGAAGGCCCTCATC
Conservation Information
Conserved circRNAs NA
PMCS 0.139636668
Functional Information
Coding potential Y
Potential coding position 5911724-5908566(-)
5908825-5911748(-)
Potential amino acid sequence MKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLS
SESIQYGISILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDT
LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW
FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE
RVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDG
YSGSDLKNLCVAAAHRPIKEILEKEKKDEGLLVSWKHQLERDSETLKMKGNLNQLRVVLSRSGM
DCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNE
SKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK
GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK
IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEA
VIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKNLCVAAAHRP
IKEILEKEKKDEGLLVSWKHQLERDSETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTN
ESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNESKSLKKSLKDVVTENEF
EKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG
TGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR
RENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAP
NRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKDEGLLVS
WKHQLERDSETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQ
NLEADPDSRVLLSSESIQYGISILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVT
FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN
FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF
MVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSP
EFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKK
MDTLGVTLRIFVLLLLTVQLKRYWRRKKRMRAFLYHGSTS*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019