Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Csa1G050430_circ_g.1 |
| ID in PlantcircBase | csa_circ_000198 |
| Alias | Chr1:5908564_5911782 |
| Organism | Cucumis sativus |
| Position | chrChr1: 5908564-5911782 JBrowse» |
| Reference genome | Cucumis sativus v1.5 |
| Type | e-circRNA |
| Identification method | CIRI2 |
| Parent gene | Csa1G050430 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | Csa1G050430_circ_g.3 |
| Support reads | NA |
| Tissues | leaf,root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-GC |
| Number of exons covered | Csa1G050430.1:10 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.139636668 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
5911724-5908566(-) 5908825-5911748(-) |
| Potential amino acid sequence |
MKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLS SESIQYGISILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDT LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE RVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDG YSGSDLKNLCVAAAHRPIKEILEKEKKDEGLLVSWKHQLERDSETLKMKGNLNQLRVVLSRSGM DCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNE SKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEA VIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKNLCVAAAHRP IKEILEKEKKDEGLLVSWKHQLERDSETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTN ESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNESKSLKKSLKDVVTENEF EKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG TGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR RENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAP NRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKDEGLLVS WKHQLERDSETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQ NLEADPDSRVLLSSESIQYGISILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVT FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF MVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSP EFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKK MDTLGVTLRIFVLLLLTVQLKRYWRRKKRMRAFLYHGSTS* |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to salt stress in root |
| Other Information | |
|---|---|
| References | Zhu et al., 2019 |