Detail information of orai.004G124100_circ_g.1


General Information
CircRNA Name orai.004G124100_circ_g.1
ID in PlantcircBase gra_circ_000365
Alias Chr04:32286397|32288604
Organism Gossypium raimondii
Position chrChr04: 32286397-32288604  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.004G124100
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Gorai.004G124100.6:7
Gorai.004G124100.1:7
Gorai.004G124100.7:7
Gorai.004G124100.4:7
Gorai.004G124100.5:7
Gorai.004G124100.8:7
Gorai.004G124100.3:7
Gorai.004G124100.2:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGGAAGTGGCGCAACAAATGCTAATACTGGGATTATTTCTAATGGGCCTTCAGACAATGTG
CAAACTTTTGTTTCACCTGGAAATGCATCAAATCCGgaaatggacagatcaaagttgggacaat
cagacgagagaaccatatatgaggtaaggtattttaatcttaaaattaaattctattatgagaa
tggtgagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1002
Transcript exons: 32286397-32286447,32286524-32286760,32287170-32287268,32
287368-32287423,32287691-32287802,32288059-32288238,3228
8338-32288604
GAAATGGACAGATCAAAGTTGGGACAATCAGACGAGAGAACCATATATGAGGTGCAGCATGGAA
GAGAGCCTGCTGATGTTGACTTCTGCTCAATCACGGCTGATGAAAGTTTAGATGATGATGTATT
ACAACAGAGGATCCACAATATTACTAGACAAAGAGAGGAGCTATTGCAGATGGAGGTTGAACTC
CGAGCACAGGCAATTGCAAGATCAAGGGTCCTGGAAATTCAGAGCAGCTGTGATTCAAAAATAA
CAGCCCACGTCAATGCTGTTGCCAAGCTTGAGGAGCAACTCGATGAAAGAGAACAGACCATACA
TGAATTCGAAAGGAAAATGGAGGAGAAAGACAGAGAGTTGCATGCCATCAAAGTTGATAAAGAA
GAGGTCTGGGCAAAGGAAGATCTTCTCAGAGAGCAAAACAAGGAACTGGCTACTTTCAGAAGAG
AACGTGATCATTCAGAAGCTGAGAGAGCTCAACACATAAAACAGATACATGATCTTCAAGAGCA
TGTTCAAGATAAAGAGAGGCAGCTTATTGACTTGCAGGAACAGTATAGGGCTGCTCAAGAAGCT
ATTCTTTATAAGGATGAACAGTTGAGAGATGCCCAAACTTGGATTTCACGTGTCCAGGAGATGG
ATGCGTTGCAGTCAAGTACAAACCACTCCTTACAGGCTGAGTTGAGAGAACGTACAGAGCAATA
TAACCAGCTCTGGCATGGATGTCAGAGACAGTTTGCAGAGATGGAGAGACTTCATTTGCATACA
ATACATCAACTTCAACTTGAGCTGGCTGATGTGAGAGAGAGGAATGGTTCTTATACTGATGGAT
CACATATGTCCCAAACAAAATCAAAAGATCTTTCTCAATTTGGTCAAACTAATGGAAAACAGGT
GGATTCTAATGGAAGTGGCGCAACAAATGCTAATACTGGGATTATTTCTAATGGGCCTTCAGAC
AATGTGCAAACTTTTGTTTCACCTGGAAATGCATCAAATCCG

Genomic sequence GAAATGGACAGATCAAAGTTGGGACAATCAGACGAGAGAACCATATATGAGGTAAGGTATTTTA
ATCTTAAAATTAAATTCTATTATGAGAATGGTGAGTAGTGAACATTGTTGAATGTCTATCAAGG
TGCAGCATGGAAGAGAGCCTGCTGATGTTGACTTCTGCTCAATCACGGCTGATGAAAGTTTAGA
TGATGATGTATTACAACAGAGGATCCACAATATTACTAGACAAAGAGAGGAGCTATTGCAGATG
GAGGTTGAACTCCGAGCACAGGCAATTGCAAGATCAAGGGTCCTGGAAATTCAGAGCAGCTGTG
ATTCAAAAATAACAGCCCACGTCAATGCTGTTGCCAAGCTTGAGGTTTGAATTTAGAATATGAT
TCATAGTATGATTGTTCTGCAATTCAACTTTCAGAGAAAAAGAAGTTTTAGTTGCTTCTATGAA
TTCAAATTTGATCTTGATTTATGAACAAGACATGAAAACAGAATTTCAGATTATAAACTTTAAG
AAATAATGTCATCATGTTTCGACTGTTGAAGTCAATGAGTAAAGACATATTCCTTTTTTCTTCC
GGAGTTGTATCCTGGGCATAATGTTAATTATTTTGAAATTACATATTGAATGTCTTATGTTTGA
CAGTTTGAGTGGTCTATAAAAAACCAATCAGATCCATTGGCACTTGAAATTATTCCAATAATGC
TACAAGTAGGTTCTACAATATTGCTGTCCTGTGACCTTCAATCTGTATTTTGGCTTTATGCTTG
ATTAGGAGCAACTCGATGAAAGAGAACAGACCATACATGAATTCGAAAGGAAAATGGAGGAGAA
AGACAGAGAGTTGCATGCCATCAAAGTTGATAAAGAAGAGGTCCATCAATATGTTTATCCTGCT
TTATTTTTCTTTTAAAATAAAGTATGATATTTAGAAAGTCATGTATAAATTAGCCCTACTTGGT
TATCTTGGCAGGTCTGGGCAAAGGAAGATCTTCTCAGAGAGCAAAACAAGGAACTGGCTACTTT
CAGGTCCATGTTTTAGGGTTAAGGCCTTTTTATTTGTTGTAAACATAAACCTCTAAGGATTACC
ACTGATATGAATGCTTTGTTTATTTTTCCCTGAAATTTTTCTAAACCTATCTAAGGGTTGAGTT
AATATATTCGCTTAGCATCTGAATGGCATTCTCAAATAGTTTTCTGCTTCTTCTGTTGGTTACT
GCTTTTAATACATTAGCCTTGCAGCTGTGTTTAAACCTTCTGAAACTTTTATGGGTTTCCTATT
CTGTCTTTTGGCAGAAGAGAACGTGATCATTCAGAAGCTGAGAGAGCTCAACACATAAAACAGA
TACATGATCTTCAAGAGCATGTTCAAGATAAAGAGAGGCAGCTTATTGACTTGCAGGAACAGGT
CACTACTTTTACTTGATTTTAACCTTTTTCTATTTTTAATTCCTGAGATTAAGGTTGAATATTC
TGTTAAACTATTCGTGGTGTGCATCTGTAGGTTTTTGAAAATGGCCTTACTTACTTTCAGATGA
ACTAAATTTATAATAACAGAATTGTTTGTGTTGGAAATTTAAGCCAAGTAACAGTTTCAATTTA
CTATACTGCCGATTGATAGAAGACAGCAAGCTACATGTTCTAATAGTAGTCTTATTCTTCAGTA
TAGGGCTGCTCAAGAAGCTATTCTTTATAAGGATGAACAGTTGAGAGATGCCCAAACTTGGATT
TCACGTGTCCAGGAGATGGATGCGTTGCAGTCAAGTACAAACCACTCCTTACAGGCTGAGTTGA
GAGAACGTACAGAGCAATATAACCAGCTCTGGCATGGATGTCAGAGACAGGTAGACAAGCCTTT
AGTTTCTTGTTTACACTTCTCACTTAATAGATTGGATGTCATTTTTTGCAATTACATTGATCTT
ATTCCTGGTTGTTAATGTTAGTTTGCAGAGATGGAGAGACTTCATTTGCATACAATACATCAAC
TTCAACTTGAGCTGGCTGATGTGAGAGAGAGGAATGGTTCTTATACTGATGGATCACATATGTC
CCAAACAAAATCAAAAGATCTTTCTCAATTTGGTCAAACTAATGGAAAACAGGTGGATTCTAAT
GGAAGTGGCGCAACAAATGCTAATACTGGGATTATTTCTAATGGGCCTTCAGACAATGTGCAAA
CTTTTGTTTCACCTGGAAATGCATCAAATCCG
Conservation Information
Conserved circRNAs NA
PMCS 0.447224011
Functional Information
Coding potential Y
Potential coding position 32286400-32288601(+)
32288414-32286584(+)
32286441-32288480(-)
Potential amino acid sequence MDRSKLGQSDERTIYEVQHGREPADVDFCSITADESLDDDVLQQRIHNITRQREELLQMEVELR
AQAIARSRVLEIQSSCDSKITAHVNAVAKLEEQLDEREQTIHEFERKMEEKDRELHAIKVDKEE
VWAKEDLLREQNKELATFRRERDHSEAERAQHIKQIHDLQEHVQDKERQLIDLQEQYRAAQEAI
LYKDEQLRDAQTWISRVQEMDALQSSTNHSLQAELRERTEQYNQLWHGCQRQFAEMERLHLHTI
HQLQLELADVRERNGSYTDGSHMSQTKSKDLSQFGQTNGKQVDSNGSGATNANTGIISNGPSDN
VQTFVSPGNASNPEMDRSKLGQSDERTIYEVQHGREPADVDFCSITADESLDDDVLQQRIHNIT
RQREELLQMEVELRAQAIARSRVLEIQSSCDSKITAHVNAVAKLEEQLDEREQTIHEFERKMEE
KDRELHAIKVDKEEVWAKEDLLREQNKELATFRRERDHSEAERAQHIKQIHDLQEHVQDKERQL
IDLQEQYRAAQEAILYKDEQLRDAQTWISRVQEMDALQSSTNHSLQAELRERTEQYNQLWHGCQ
RQFAEMERLHLHTIHQLQLELADVRERNGSYTDGSHMSQTKSKDLSQFGQTNGKQVDSNGSGAT
NANTGIISNGPSDNVQTFVSPGNASNPEMDRSKLGQSDERTIYEVQHGREPADVDFCSITADES
LDDDVLQQRIHNITRQREELLQMEVELRAQAIARSRVLEIQSSCDSKITAHVNAVAKLEEQLDE
REQTIHEFERKMEEKDRELHAIKVDKEEVWAKEDLLREQNKELATFRRERDHSEAERAQHIKQI
HDLQEHVQDKERQLIDLQEQYRAAQEAILYKDEQLRDAQTWISRVQEMDALQSSTNHSLQAELR
ERTEQYNQLWHGCQRQFAEMERLHLHTIHQLQLELADVRERNGSYTDGSHMSQTKSKDLSQFGQ
TNGKQVDSNGSGATNANTGIISNGPSDNVQTFVSPGNASNPEMDRSKLGQSDERTIYEVQHGRE
PADVDFCSITADESLDDDVLQQRIHNITRQREELLQMEVELRAQAIARSRVLEIQSSCDSKITA
HVNAVAKLEEQLDEREQTIHEFERKMEEKDRELHAIKVDKEEVWAKEDLLREQNKELATFRRER
DHSEAERAQHIKQIHDLQEHVQDKERQLIDLQEQYRAAQEAILYKDEQLRDAQTWISRVQEMDA
LQSSTNHSLQAELRERTEQYNQLWHGCQRQFAEMERLHLHTIHQLQLELADVRERNGSYTDGSH
MSQTKSKDLSQFGQTNGKQVDSNGSGATNANTGIISNGPSDNVQTFVSPGNASNP(+)
MVLILMDHICPKQNQKIFLNLVKLMENRWILMEVAQQMLILGLFLMGLQTMCKLLFHLEMHQIR
KWTDQSWDNQTREPYMRCSMEESLLMLTSAQSRLMKV*(+)
MVLSSDCPNFDLSISGFDAFPGETKVCTLSEGPLEIIPVLAFVAPLPLESTCFPLV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b