Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | orai.004G124100_circ_g.1 |
| ID in PlantcircBase | gra_circ_000365 |
| Alias | Chr04:32286397|32288604 |
| Organism | Gossypium raimondii |
| Position | chrChr04: 32286397-32288604 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.004G124100 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | 2 |
| Tissues | ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Gorai.004G124100.6:7 Gorai.004G124100.1:7 Gorai.004G124100.7:7 Gorai.004G124100.4:7 Gorai.004G124100.5:7 Gorai.004G124100.8:7 Gorai.004G124100.3:7 Gorai.004G124100.2:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.447224011 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
32286400-32288601(+) 32288414-32286584(+) 32286441-32288480(-) |
| Potential amino acid sequence |
MDRSKLGQSDERTIYEVQHGREPADVDFCSITADESLDDDVLQQRIHNITRQREELLQMEVELR AQAIARSRVLEIQSSCDSKITAHVNAVAKLEEQLDEREQTIHEFERKMEEKDRELHAIKVDKEE VWAKEDLLREQNKELATFRRERDHSEAERAQHIKQIHDLQEHVQDKERQLIDLQEQYRAAQEAI LYKDEQLRDAQTWISRVQEMDALQSSTNHSLQAELRERTEQYNQLWHGCQRQFAEMERLHLHTI HQLQLELADVRERNGSYTDGSHMSQTKSKDLSQFGQTNGKQVDSNGSGATNANTGIISNGPSDN VQTFVSPGNASNPEMDRSKLGQSDERTIYEVQHGREPADVDFCSITADESLDDDVLQQRIHNIT RQREELLQMEVELRAQAIARSRVLEIQSSCDSKITAHVNAVAKLEEQLDEREQTIHEFERKMEE KDRELHAIKVDKEEVWAKEDLLREQNKELATFRRERDHSEAERAQHIKQIHDLQEHVQDKERQL IDLQEQYRAAQEAILYKDEQLRDAQTWISRVQEMDALQSSTNHSLQAELRERTEQYNQLWHGCQ RQFAEMERLHLHTIHQLQLELADVRERNGSYTDGSHMSQTKSKDLSQFGQTNGKQVDSNGSGAT NANTGIISNGPSDNVQTFVSPGNASNPEMDRSKLGQSDERTIYEVQHGREPADVDFCSITADES LDDDVLQQRIHNITRQREELLQMEVELRAQAIARSRVLEIQSSCDSKITAHVNAVAKLEEQLDE REQTIHEFERKMEEKDRELHAIKVDKEEVWAKEDLLREQNKELATFRRERDHSEAERAQHIKQI HDLQEHVQDKERQLIDLQEQYRAAQEAILYKDEQLRDAQTWISRVQEMDALQSSTNHSLQAELR ERTEQYNQLWHGCQRQFAEMERLHLHTIHQLQLELADVRERNGSYTDGSHMSQTKSKDLSQFGQ TNGKQVDSNGSGATNANTGIISNGPSDNVQTFVSPGNASNPEMDRSKLGQSDERTIYEVQHGRE PADVDFCSITADESLDDDVLQQRIHNITRQREELLQMEVELRAQAIARSRVLEIQSSCDSKITA HVNAVAKLEEQLDEREQTIHEFERKMEEKDRELHAIKVDKEEVWAKEDLLREQNKELATFRRER DHSEAERAQHIKQIHDLQEHVQDKERQLIDLQEQYRAAQEAILYKDEQLRDAQTWISRVQEMDA LQSSTNHSLQAELRERTEQYNQLWHGCQRQFAEMERLHLHTIHQLQLELADVRERNGSYTDGSH MSQTKSKDLSQFGQTNGKQVDSNGSGATNANTGIISNGPSDNVQTFVSPGNASNP(+) MVLILMDHICPKQNQKIFLNLVKLMENRWILMEVAQQMLILGLFLMGLQTMCKLLFHLEMHQIR KWTDQSWDNQTREPYMRCSMEESLLMLTSAQSRLMKV*(+) MVLSSDCPNFDLSISGFDAFPGETKVCTLSEGPLEIIPVLAFVAPLPLESTCFPLV*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |