Detail information of Os10g0477100_circ_g.2


General Information
CircRNA Name Os10g0477100_circ_g.2
ID in PlantcircBase osa_circ_007127
Alias NA
Organism Oryza sativa
Position chr10: 17796031-17796251  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0477100
Parent gene annotation Similar to Ankyrin-like protein. (Os10t0477100-01)
Parent gene strand +
Alternative splicing Os10g0477100_circ_g.1
Support reads 6
Tissues shoot, root
Exon boundary   No-No
Splicing signals   TA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCTTTGCTTTACGTGATCTGTTCCGTCCAATCTATGCCTTTCAAAAAAAATGTTTTCAAGTG
CTAATGTCCTATCCTTACTACACCTCATTGGACTCAgtcccaagatgatcctatctattttctc
aaaattttgtcttatttagatcctactttgattgacttatgtgcacagaccgatcatttatacc
tatacttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 221
Transcript exons: 17796031-17796251
GTCCCAAGATGATCCTATCTATTTTCTCAAAATTTTGTCTTATTTAGATCCTACTTTGATTGAC
TTATGTGCACAGACCGATCATTTATACCTATACTTTTGAGATGAGCTGTTTAAGTTTGTGCTTT
GCTTTACGTGATCTGTTCCGTCCAATCTATGCCTTTCAAAAAAAATGTTTTCAAGTGCTAATGT
CCTATCCTTACTACACCTCATTGGACTCA

Transcript length: 221
Transcript exons: 17796031-17796251
GTCCCAAGATGATCCTATCTATTTTCTCAAAATTTTGTCTTATTTAGATCCTACTTTGATTGAC
TTATGTGCACAGACCGATCATTTATACCTATACTTTTGAGATGAGCTGTTTAAGTTTGTGCTTT
GCTTTACGTGATCTGTTCCGTCCAATCTATGCCTTTCAAAAAAAATGTTTTCAAGTGCTAATGT
CCTATCCTTACTACACCTCATTGGACTCT

Genomic sequence GTCCCAAGATGATCCTATCTATTTTCTCAAAATTTTGTCTTATTTAGATCCTACTTTGATTGAC
TTATGTGCACAGACCGATCATTTATACCTATACTTTTGAGATGAGCTGTTTAAGTTTGTGCTTT
GCTTTACGTGATCTGTTCCGTCCAATCTATGCCTTTCAAAAAAAATGTTTTCAAGTGCTAATGT
CCTATCCTTACTACACCTCATTGGACTCA
Conservation Information
Conserved circRNAs osi_circ_008516
PMCS 0.449441931
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017