Detail information of scaffold13.306_circ_g.1


General Information
CircRNA Name scaffold13.306_circ_g.1
ID in PlantcircBase ecr_circ_000116
Alias NA
Organism Echinochloa crus-galli
Position chrscaffold13: 2714402-2715532  JBrowse»
Reference genome Echinochloa crus-galli v2
Type   ei-circRNA
Identification method circRNA_finder
Parent gene scaffold13.306
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered scaffold13.306:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTAACTTTGTAGCGGACTCACGAACTGGAATCAACTTTGAATTTTGCATGCACGAACGTGGAA
TATGCTTGTCCAATGTAACTAGTTTGCACTGACGATccttattgattccacagctgataaacat
atgatggtggcgaagtaagccgcttggacccttatattccacataaccatgatctatagtgagg
tttcgacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTATTGATTCCACAGCTGATAAACATATGATGGTGGCGAAGTAAGCCGCTTGGACCCTTATA
TTCCACATAACCATGATCTATAGTGAGGTTTCGACGCTCATCTCTTCCAAGCACAAAAACCTCC
TCAGCAAACTTCACCTCACTGGCAAATGATGGAATCTGAGTAGATATATCCATAGCAACCTTGA
ACAAAGCAAGGTTATAATGCTTATCATAGTGCAGCAACTCAGCAACTTTTGTTGTGTCAGTCTT
ATCCATGAAATGAACACAAACCTGAAAATTAATAGCATAACCCAAAATATTATATCTTTCAAAA
TGAATGACGACACATGTAGTTCACTTTACAGAGAAAGGTAAACGCATAATAATAATCTAAAGAT
TAAAATCCATTCTATCCATGAAAGGAATGGGGTACATGATCATTTTAAGTAAATTATGCTATTA
GTTTCACTTTCTAGAGAAAATCCATTCTATCCATGAAAGGAATGGGGTACATGATCATTTTAGG
AATGCGGTGGGCCGTAGTATTGCGTGCACTTGGGTCGTTTTTGGCCCGCGAGGAGTTGGTCGCG
TTTTATTTTGCGCTTAGCGAGGGTGATTATCCCCTTAGTTAGGGGACCCCTTATGGCCGTCCCC
GACACACACTTTGTCCACACTATAAGCATACTACACATTTAAGCTAGAATTGTTTATTTAGATA
TTGGTTGTCATAAAAAACCCCAACTATATTTGGATGTGAACTAACCTCAGCATGGGGACTATAG
TCATCTGTTGCTGACCACTCATCAGATGATGAAGGCTTTGACTGGATCAAGATAGCAGATGTCA
AGACAATGGCAATTTTCTTATCTGCATCCCAGTCTATCAAGAAACCCGAGGTCCGTGTCAACAT
TTTACCATCTGCACATAACCAATTAGTAAGACCCAAATCTCATAAAGCAAGCATCATGAAAACC
TTAGATAAATGAGCATATATTACATACCGATATGTGATGAAAATCCCACAACATTTTTTGCAAT
TTGAAGAATTAACTTTGTAGCGGACTCACGAACTGGAATCAACTTTGAATTTTGCATGCACGAA
CGTGGAATATGCTTGTCCAATGTAACTAGTTTGCACTGACGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References NA