Detail information of Zm00001d000011_circ_g.1


General Information
CircRNA Name Zm00001d000011_circ_g.1
ID in PlantcircBase zma_circ_010406
Alias Zm_ctg_circ00012
Organism Zea mays
Position chrB73V4_ctg150: 728971-733482  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d000011
Parent gene annotation glyoxalase I homolog
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d000011_T014:7
Zm00001d000011_T005:7
Zm00001d000011_T002:5
Zm00001d000011_T018:4
Zm00001d000011_T025:5
Zm00001d000011_T006:8
Zm00001d000011_T020:10
Zm00001d000011_T019:10
Zm00001d000011_T023:6
Zm00001d000011_T011:5
Zm00001d000011_T001:4
Zm00001d000011_T024:8
Zm00001d000011_T009:9
Zm00001d000011_T016:5
Zm00001d000011_T022:6
Zm00001d000011_T021:6
Zm00001d000011_T017:4
Zm00001d000011_T007:9
Zm00001d000011_T010:7
Zm00001d000011_T003:7
Zm00001d000011_T013:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAACACGGTAAACTGCATGGAGCATCCTCTTGCTGTCCTGTTTATGCCAGTCAACCACAACCT
CAGCTGCCTTCGAGGCTTCACTATCGGTTGCCATCCcttagagccccttgtctacgccactgcc
aggaatccacacgttattgattaatgcgtcttttttcctacgtcgccaattgtcgtctctcttg
gcttgttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGAGCCCCTTGTCTACGCCACTGCCAGGAATCCACACGTTATTGATTAATGCGTCTTTTTT
CCTACGTCGCCAATTGTCGTCTCTCTTGGCTTGTTGAGGTTTGTTGTTAGGAAGAAGCCAGTCT
GCATTGGCATCTGTTGTCTTTGCAAACATCCATTGACACGCTGCATGGATTACGGAGGGAAAAT
TATATAAGATACGTCATAAATATAACTAGAACATGAGGCGCCCATTCGGGCGCCCTATCGAGAG
GTTGTAAGCCAACAAAATCATATATAATATGACATAGTAAAGATATATGTTGTTGTGGCATTAA
ATAGAACAATATTTGAAGTTAAAACTATGGATAGGATAGAACAGATGTGTTTAAATCTCTTCAT
CAGAGGTCACAAAATGAATTGAAATGTGACATCATGGTGGCGTGGGCCCTAAGAAACAAAAATA
CAAAACTGTAAGCACACCAATGCAAACAGGACACATTGGAAGTTTAGTGGATCCAACCGGCGGA
GTTGTGGCAACCTGTAAGCAAGGTGTATACTGCACAATAGCTATAAACATACCACGTCACACCT
CTCGCTATCCATGGAAACAAGGGTTAATCGTCAATTTAGCAACAATTTTGAATACGATCAGTAA
TTTCAGCGAATGCTCGAACATTACAAAAAAACAAGTTGACTATTAGGCAAACTGGAATTACCAA
GAGCATTGGCAGATTGAAATAAAGATCATACTCGACTAATCTTCTTTTTTCTATCACACTGAAT
ATTTTACATTGAATATCAGTTCTGCAAGATTTCCTAAAAAGGTCAGTACAAACACCAGGGAAGA
GTAAAGCAGCAGATTAGTAAGTAGAACAAAAAAATCATTAAAGAAGGTGACTGATGTACCATGG
TTCGATCGCCCAATCTAACGGTGACAGGACATATGTTCCACTGACCTACTTATTGTAGATGTTG
AGCAAGTACCAAAGACCGAAGATAGTTTCATTTAATCCACCATTAAATGAAGAAAATTGTTACC
ATTGGTTCGTTCCTATACAAATATTACAAGATGGTAATCATCAAATTAAATAACTAATTACAAT
TAAGGACATAAGAAGCTACTCTATATAGAAATATAAATGTTGCGTAATTTCCTAGCAGCTTTAT
AGATAATTTAATAATAGGAAAATAAGATAATGTTGTACATACCTGAGTTAGCTATCAGAGTCGA
GAGCATGAAAACCCTAAACCTTCAGACTACAAATAAAAAAGAGAAGTAAATGCCTTTGCTGGTG
TCAAATCACTTCCCAATAGAAACTATCCACCAAAGTAAACAACAGCGAAAGCGACTGGTGTATT
GTTTCAGGTTAAAGCTATTCAACTACAAGAATTAAGAAAACCGATGAATAATGCAAAATTTAGT
TTAATCTTGAAGATACACACATGGTGCACGGCAAAACTTCACCAAAGGAATATATCGCAGCAAG
TAACTGAGCCTTGGAAAACCAAGAAAGTCCATCGTGGACGTCATGTACTTTTAACTGGAAAATT
TATTCCCAAACATAGCACCTAAAACGAAGCTATTTGAAGTTGGAACAGTTATACACAAAACTAA
TTTCAACACCACCACACATCCAGAGTTATAGACCTTAGAGTTTACCGGCCGCCTAGGGGGTTTC
TTGCCTCCAGGATTCTTTTTCTTTCACATCTTGATTATATCCTCTCAATGAACACAAAAACAAT
ACATGAGTTAAATCAACACTGAAATATCAATTATCATCACAAAACAAAAAGATATATGGACAAA
TAGCATACCCAAAGTCATGTCCATCATTTTCTCGGTAAAAGCGGTCGCTTCAACCGTGAGGGGT
GGTGATTCCATCTCTATATGAACGTATATGTATAATTAGAGTAAGAAAACACAGTTCCGAGCAG
AGACTACAAAAGTGGCAGGTGGCATTTGAGCACCAGGAAATTCAAGCTTGCAAGAAGCTAAATA
AAAGTATATTAAGCTCATACAGAGAAGATTAAAATCTATACTACTTCCAACTATGAAGGCGCAA
TAAGACAGCCTAAAATAGTAACTGAGTAATCTAATGAGGCTGCAAGCATGCACCCTCCCTTCTC
TCTACCGAATTGCTCTGCCTGTACCTATCTTGTTTATACAAATAATTCGATTATACATGTAGCT
GATGTAGGATTTTCCCTTCTCAATGTTGCAGTAAGTTTATTGGATTCCTTTATTTGTTCGACAT
CAACTGTGAATCTCTTCTTGACTATCCACTAACGACCTCTGGACCGCCTCTACTAAGAGTTCGA
CTGTTTGTCAAATAGAGGCCTTGCATTTTTTGGATGGAAGGGGTACCATCATGTATTTGTTGTT
CCCACGCAAAAATCGACAAACTATTTCAGTTAAAACAGAATAACTATGTATTACCAAAGTCAGG
TATTATACCTAGAACATACACAGGAAGGTAATATTGCAAGAAACTGGGGTTATCTTTTGAGTTA
TATTTTTTCATATGACTTAGCCACACTGTTAACCTGACTGGACAGGCTCGGATGACGTTGATAA
CCCGATGGATAATATTGATCAATGGGCGATGAAACACAATTTTTAAAGCTCCAGGTAGGATGTA
CCTGTAAGTAACTGTAATTAGCCCTCCATGATTTCCTCAAAGCACTCACTACAATCATATCTAG
CTGCAATTTTATCTTAAACCCCAGTTTCTAACAAGTGGTACAATTTCACCGACATCTTTTATCT
TAAAATGGCCGTTCTGAATTATCTTCTTAAGGGCTCTTCTATCAGTGAGTGCTGCCCTAAAAGA
TGTAATTCCCAATTTAAGAGCAGACATATGGAATACTTCAAGCTCCCCACTGTCACTGGAACCA
TTTGTTTTAATGCTTCTCTAGAGAAATTTGATCAGCTCATCACCAGCTTCCTTCTCTAAAATTA
TAAGGTCTGAGTAACCTATTATAGTACAAATGTATTTACTCAATATAGTACATACCTGAGAGAC
GGTGTGTGGTAGAGAGGCGGCACGAAGACTGACCAGGAAACTGGAGGCTGTCGAGCGGAAGCGA
GGAAGAGGGTGACGTCGATGGGTCAGCGTGCCGCCACCGTGGCGTCATGACATGGGCACGTCGC
GGGTGGCGGTCTGGTGCGGTGCAGGCGGGCTTACTGCCGTACGCCCTTTGCGCTTGGCCTTTCG
TGTCCTTAGCCCCGATACGCCCTCGCTTCGTATAGTCGGGCCGCCGGAGACGCCCACACCTCAA
TAGACAACAGAAGTCATATAAGGTAAGTTGTTTGAACATAATAGTTTAGCACTTTTGCTGTTTT
TGAAAAACATGCACAAATAATCAGCTAGCAAACTTCTCCTTATAATGTTAAACTCAAATAATTG
AATGTGTAGACTATTGTGTCTGACACGGTGACAGCTGACAGCATAATGATCATAAGGTTTTTTA
GCCAAACATGTACAAGTACCCAGCTAGCAATCTTGTTTTTATAATGTTAAACTCAAATAACTGA
ATTTGTAGACTATTGTGTCTAACACAGTGGATTGCAATTGTAAAATAAACTACAGCTTCATTCA
AACATCAAGTTATCACTAATATACCTTGATCATCCTTCGGCGTGAATACTCTATCAAACTTAAA
TGTCTTTTTAGTTGTTCCGCCATTTGCATTCAGGCCTGATGACACCTCATTTTTGCTTAAGGGT
CGGCATCGACAAAAAACCCTGATAATTTCCTGAAATAGTTGAGAAGACAAATAGAATGAGAATA
CAAAATACATTCTCTCAGGTAAATGTTAAGAGTGAGCACAAAGAACTGGATGCACACAGGATAA
TAGATACCTTTTGTCTCTTGAACAATATTATAAAGTTTCTTCCTCTTATCCATCTCTTCATAGC
ACTTCAATTTTAAATCTTCACACTGTGCAACTGCAATAATTTAGCCATACATTGTTTGTTTTAT
AGTTGCAAGGCTGCAAAATTACACTTCAGACATTCAAAAACAGAGTAGTGTTATCTTCTATCTT
TAGCTTCTACAAGGGTTGATTCATTCTTCATCTAATAAAAAACGGCGCGACGGCCACCACGGCG
GGGGTCAGCGGCCAGCTTCTACAGAGGAACGGCGAGGACGGAGCCAGGCAACGGCGCGACGCAC
GTAGGACGCGAGACCTCCGCAAAGTTGGTCAATTCAACTGCAAAGTTGGTGTTCTCTGGCCCAA
AGCCAAGGAAGGCGTTGGTGTACTTCTCATCAGGAACATCCCTTTTCCTCAGCAGTTTCATCCC
AAAGCATTCTGTGTAGTACCTACCAGAATCATATTATGTCACATAAAAAAGCATAATCATAGCT
GCAGGTGTTGCAAATGTCATTTACAATACAACAGCATACTTGATTGTGCGGTCCAGATCCCCAA
CACGGTAAACTGCATGGAGCATCCTCTTGCTGTCCTGTTTATGCCAGTCAACCACAACCTCAGC
TGCCTTCGAGGCTTCACTATCGGTTGCCATCC
Conservation Information
Conserved circRNAs NA
PMCS 0.094643104
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020