Detail information of Os08g0308100_circ_g.2


General Information
CircRNA Name Os08g0308100_circ_g.2
ID in PlantcircBase osa_circ_036659
Alias NA
Organism Oryza sativa
Position chr8: 12907420-12912320  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method PcircRNA_finder, circRNA_finder
Parent gene Os08g0308100
Parent gene annotation Similar to TGF-beta receptor-interacting protein 1. (Os08t030810
0-01)
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues pistil
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0308100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCCTGTTAGGAAATGCGACCAATCTGCAGATTTTGAAAGTGAAGTAATTGTTTTCTGATGTCC
TTGCTCTTTGTCTGACTCCTTCAGACATTGTCCAGTctcagagtttcagaacttctaggtttaa
atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcaccaccac
tcgaaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGAGTTTCAGAACTTCTAGGTTTAAATCTTGATGTTGAAGTAGTCAGAATCAAAATGGTGC
AGCCTTACATATCCATCTTCACCACCACTCGAAAAGCTGTTTAACATCGCATCATAGATATGAA
TAACTGAAGCTCAAAGCAAAAACACTTTAATTAACCATCACATGAGAGAAAAAAAACATGCTTG
AAGAGAACTAGTCATCACATAAAGCAGCTCTCATAAATTCGTTTTCACCAATAGAAATCAGAAT
AGCATATATGACCAAATGTGATTGGCAACAATCATTGAGCCACCCTGAGATAAAATCAAAGTAT
ACAGCAATCATTAGAAGGCCAGCGGTGCCCCCACTGAGATATCGTCAAATCTAATTTACAATTT
TTTAAACTTCTTTTATGCTGAAATACTATACAATTTTCAGATACAGTAATAGTGGCTCCCAATG
AAAAATGCATTGGAATAGTAATGAAGACTCCTGCACATACATTGAATCAATACAAAAACACCTG
GGACATTTAACTCTAGGCCACTTTTAAGATGTGGCAATTAATTATTTGCCACTCGCTGTCTATG
ACATGTGGGCCCTCATGTGTCTATGACATGTGGGTCCAATGGCAAATCATTTATCACCATCCGT
AAAAGTGGCAAATAATTAATTAATCCGATGTTGGGAGGAAAGATAGCTCTCATAAGTCCTAATA
AAAAAACACTCCAATCAGAATAGCGTATAAAACCAACTTGATTGCATTGAGCTTCAAAATCATT
AGACATAAACAACACTTCAAACATCTAAGAATGCAACTCAATTGTGCACTAACAGGTTATCAAA
TTAAATATTGGACATGGCATGGTTCTCATATGTACAAACAGCAGCATAAGAATTCAATAGAGAA
CAACTATGGCAAACATGACCAATGAATCAATTTAAGGGACAAAACTAGAGAGGTGGTGGATTAA
AATGGCAAAGGTGAATGATGAGTTGTTGTACAACAATACAAAAGTAAGAGCTTCAAGTAAAAGG
AGAGATGCCCATGGGAACATAATAACCACTAGAACCACAAGAATGTATTAAAAATCTACATGGT
CAGATAAAATACAAAATAGAATCTGCTCTCATAATGTTTATGGCATCTTAATATGATTCAGAAT
AGCGTGTATTGCCATGGTGCATGGGTTAATCATTGAGCAAAAAGCACACAAATATGGGAAAAAG
CTAATCAAGAACATAAGTGCAGGGGCAGAACGTAAATACAAATACATGTATTAAGAATATTACC
TCCGCCCATCAGGATTAAATGCCAGCGCGTTAATTGGTCCAAAATGGCCTTTAACACCACCAAT
TTCCTCTTGCAAAATCTAAAGAAAAATATAGAACTCTCATTCTTGAACAGCAAAATATAACTTT
GAAAAGATAACCACACGATCATTGTTCTCACTAAAACATAAGATGGAAACTATGTGCGAAGAAC
TGACCTTGTGAAAAAATTTCGCTTCAAATTTTCCTGCACGACGATCTGTCATAGTCACATTCAT
CGCATCTTGACCACCTCCAATAACCACCTAACACAACAAGATTTCTTAGGGCATCCACAATGTA
GTCCAAAAGTGGTCCATAAGCAATATAATATTTCATTCAACTACCTAGCAACATTGTGGAACTA
GTCCATAGCAAAGAAATAACAAAAGCTACCCATAAGCATATGGGCTACCCATAGAGAATAAAAT
ATATTATTTGTCTCTACTTCTTCTCTCCTCCTAATACTATTTGCTATATATATATACATTGTGA
AGGTTGCTATAGTTAAAGTCTCTTTATGTGGGCCCCATCTATATGGATCACTTTTGCCATATAC
ATTGGTGATGCCCTTATGGTTAGTAGTTGAAATACGAGCCTACCCTACAATTCAACAACTCATT
TTACTCATCCCTCATTTTTAGACTCACATTTCTTACATCTTACAAATGCAACAGCTAATATTTA
TCAATACTATTATTCAACAGCCTAGATCGTACCCCTCACTCACCCGCACCGGTGCCCCCCACCA
CCACATGGCCACACCTATCAATTCCCCCGCACCCGATAATCCTCTATCACTTCACCCCCCCAGC
CCCGGCAGCCCCACTTCTCCCCCAAATCACGCCTTCTCCGCCAAACCCTAATATCCTATATCCC
ATCACCGTCGCCGAATCCGGTTGCACAGACGCGGGGTGCCGCCGATCGGAGACCAGATGTCAAC
CCTGCATCGACGCCTCAACAACCACCGCCGACCCCGATCCGTAGTGCCGCCTCTTACTCTCTCA
CTCTGCCGCGGCTGCTGCCAGGTCCCGACATTCAAGATCACTACTGGCATAGCTCCCCCATCGT
CCAAAACCATGCCGGCAACGATCCTCTGTGGCATCCACGAGTCGCCACATTTTGTTATTGAGCT
CACTGATGTTGGTCCGATATGACATGGCTGCAGTTTGTTATTAGGTTTAAGATTTATTTGGGAA
AACTAGATTCTCCTATTCAAAGGTTGAAACATCCAGAATTGGGCACCATGGCATCACCTCCATG
GCAACCCTGACCCTTATCTAGCTATATCGTTTCCCCATTGCTTTCTAGATCAACAGTTAAATAC
TACTAAATTGCAGTGCCTAACCTTTCTATTTGTATGTGCTATAAGTCAATCCAATGAAGGTATA
ATTTTTATAATTATCATTGTCCTACTCTGGTTCTGCCATGAATTTTGGGAGAAAGCCAGAAAGG
TACTACTGACAAAAAGATAATGTGCATATGACCAGTCTCCTGTACATTGTAGATGATATCTTAC
TTGAGAATGGCATGCTCATGTTCCTATAAATTTAAACTGCCATCACTCAAAGAAAATACAGCTT
TTCTTGTCACAACTGATGAGTAATTTGCAGCAATGCTGTAACAGCAAAGATAATAGACAAAATG
GATTGATGATATTAGCGGTACTAAAGCTGTGTAGTAATAAATTGTGTTTTGGTTAAGTCCATAG
TAAAGGAACCTAATCTTCTTAACTGTTCATTTTGTCTCACCAAGACTGAAGAATGCATTTCTCT
TTTACCTATGTGTATTCAGAACTATGAGGATAAATATGCAGAGATGCTTCTTCTGCTTCAGAAA
TTTGTGGAATACAAATAAGCTAGGGCCAAGATAATGATTAATGGCAGGTTAAATTATCCGTGCA
TATAAAATGTCATCAAGCCTTATATTTTTCAAGATGCATGAACTGACCGAAGGTTGATGTTTCT
GCCATCCACTGCTTTTGGTAGATGAAGTAAAAAGATTTTATTTTACACCTTCGTGATGGCTAAT
AAAGCTTATTTTTGGTGAACCATTAAGATGGACGCACTAATGGTTCCCATGGACTGAAGTTCCT
GATTCCTGACAGCATGTGACCTGCCTTCCTCACACCCAAGCATCCCAACCTCCAACTTAAAGGT
GTTATTAGGATTTCCCCAGCCTATAATAGGTATTATTAGAAATTAAGGGTGCAAGTGGGCCGGC
CCGCAAACCCACTAATAGTACAAACAAGTGGGTAACCCGCCAGGTTACTCAGTTACTATAAGTG
GGTTAGTGGGCCAGCCAACTTGCACCCCTTGATAGAGAACCTAAGAATTTCTAAGTCAATACCA
AATATTCAAAGTTAGGATTAGTTAATTAGTTGTAGGTTATATTCTATATTGTATCAAATGCTTT
ATTTTTGGACTTGGAACGAATTAATGGAATAACTTCCCACCATTCTTTTTATTGTGCATATATA
TTGCCCTCGTATAATGTATATTGACGCGATTCTATATAATTATCGATGGTCATGAATCATTATC
TTCAGGCAATATAATTACTGCTCTTTGCGTTAAATATATTTCATATACAACTTAAATCGAATTA
AAATCTCAATTGGACATATGAACATTGTTTTCACTAACATGACAATTTTCATAGTTTTTTTCAA
AAATATAATGGTTCCGTAGCATTAGCATGGGCATATTACTAGTGAGAACAAGACTGACTACTCG
TTACAGTAATAAATTACAGGTGAACAATACAGATGTGGCCAATTAGACATTTTTCCAGTGTTAG
TACAAATACAAATCCATGACAGCCAACATTACTCAAATAAATTATATAGAATTGGGGTAAATCC
AGGGTCAAAAGATGTGCTGGACAGTACATAGGTGCTTTGCACTTCCCGCTGTATATTCATTGTT
ATCTATACATGTAGAAGTACTAATTGCAGATAATAAGTATGTGAATGGATCATTTGTTGCTCTA
CTGTCTTATAGTAAACTAATCATAGAAAGAAAACGACTCAAAACTAAGAAAAAAATTGTGACAG
CCAAAATCATCGAAAAAATGAAGTAATATCCAACTTCAACAAATAAAGAAGTTTTCTTCAAAGC
AAAATAAAGAAATGGAGGCCATAGGCATTTCTATCCAAACAATAACATATTGGGAACACATCCA
ATTAGCAAGACATAAAACCAAGTAACTTAAGGCATGACCATATGTAACGTGATTATAAAAGAAT
TGCACCTATAGAAGAATATTACGTATTGTGACATAGGCACATACATGGTCAAGAAGAGGAGAAA
TGTCAACAGCATTAACAGGTCGCTCAGTGACATATGTCTTGATCAGCGTCAGAGTTCTTGTATC
CCATAGCTATCCAGATAGCAATGTGCATGTCAGTAAATAATCATATTTGAAGTACAAAGTACAA
ACAATTGAAGACATGATTATGCTAGCAGCTTCAACAAAATATCACCTTAGCAGACTTATCCAAG
GAGCCTGTTAGGAAATGCGACCAATCTGCAGATTTTGAAAGTGAAGTAATTGTTTTCTGATGTC
CTTGCTCTTTGTCTGACTCCTTCAGACATTGTCCAGT
Conservation Information
Conserved circRNAs osi_circ_015214
PMCS 0.097231587
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017