Plant Circular RNA Database

Detail information of orai.007G195100_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.007G195100_circ_g.1
					
						ID in PlantcircBase
						gra_circ_000745
					
						Alias
						Chr07:19312116|19314063
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr07: 19312116-19314063  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.007G195100						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						ovule
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.007G195100.2:4
Gorai.007G195100.5:4
Gorai.007G195100.1:4
Gorai.007G195100.6:4
Gorai.007G195100.3:4
Gorai.007G195100.4:4

General Information
CircRNA Name	orai.007G195100_circ_g.1
ID in PlantcircBase	gra_circ_000745
Alias	Chr07:19312116\|19314063
Organism	Gossypium raimondii
Position	chrChr07: 19312116-19314063 JBrowse»
Reference genome	Graimondii_221
Type	e-circRNA
Identification method	CIRI
Parent gene	Gorai.007G195100
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	2
Tissues	ovule
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.007G195100.2:4 Gorai.007G195100.5:4 Gorai.007G195100.1:4 Gorai.007G195100.6:4 Gorai.007G195100.3:4 Gorai.007G195100.4:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTCCAGATTAGTGCTGTTGATCAAATTAAGGCCAGTAGTAAGTTCTCCCTTCATTTCAAGGTA
TGTCTTTGCCTGTTCTTTAATCTTAACGAAGGCCTCctgatcactgaaatactgccctggaatc
tctacgtcaactacatggaagtcccgtaacaccctgctttcctcctccagcttcagaacagcag
gaaacctg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGATCACTGAAATACTGCCCTGGAATCTCTACGTCAACTACATGGAAGTCCCGTAACACCCTG
CTTTCCTCCTCCAGCTTCAGAACAGCAGGAAACCTGTCCTCAACATTGCTCTGTAGTATATTTT
TCCAGTGTTTTAGTCGTTCGGTCAGTTCAGAAAGTGTGACTGGAAAAGTTGTGGTACTTTCTGG
ATCTAGATCACGCTCAAAATCCTGCTTGTACTCCCTAACAAAATCTACATGCTTGTTGACAGCA
TCTGCAGAGAAGCAAGCCCGACACACACCAGAGAGCTCTTTCTTGAGAGATTGGGGAACTTCTG
AGGTAGTAGCAGAGGGGTACTTGTAACAGCGGTGCAGCAGTGCATTGACCACTGCAAGAAGTCT
CTCCTCAGGCAGAGTAACAAACCTTGAACCAATTTCGGTTAAGAGAACCTGTGAAGATGTAAAG
GCTTAATTTTATAAAATTAAATTGAGATTGACTGAACGGTGTGGGAATAGAGCAAACATCACAG
TTTTGATTTCATGGGTTATCCATATTTAAAATTAATGGACAATCACTTTAAAAAAATGCAGGTA
GCTGGTCATGAAACAGAATGGTCGTTCACTTTTAATCAAGCTCCACTCTTAATATTCATGAGAT
GTGTAACAGTAAACTGAATTCTGGTTTGTTATGAAGATCTGGTGTATGCCAAATCATAAAAGGG
AAACTAAAAAGTTTAGAACAGAATTTCTCACCTCAAGCTCACCAGCCAAGTTAGCATGCTTGCT
TCTCAAGGCCTCCATTATATCCTTAGCGGCATCAAATGCACTGGCAGCAGAAGCAACCAAACCT
AATGCACCATTACGCCTCATTGTACCCTGCCCACCATCACTGATGCTTGAAGAACTTGGCTGCA
GAGCTTGGTCATTTCCTGTGTGCACACTGCTCTCTGTTGCAGTGGATCGCTCAGGTTCATGCCC
ATGAGAATTTCCCCCATCATGAGATCCAATTCCACTACCAGATTGAGAACCTTGATGAACTTGA
TTATCTGGTGCTAAATTGCCTCCAGTATGACTCTGCACTCTAGCACTTCCATCAGCAGCCAAGA
CAAGAGAACTAGGATTGGCACCAGAGATGTTCTGTTGCATTCTTTGCTGAGCCATGGCCATTCT
GCCAAGTTCTGATTTATTTGCAACATCACGGCGCTCAAGCAAATAAGTCCGGAGCCAGTAATAG
AGTGCCTGAGTTTTAAATGAAAAAAAATTAAAAATTTGCAATAGCTAAATGAGTAACGCACACA
ATACATTTATTATGTGGGTGATTAGAATAAACATTTACCTGCGGATAAACGGTAGCTATTTTAA
GAAGCACAAGTTTGCAATGAGGTGCTTCAGTCCGTTGCAAGGAAAGTAATAACTGTGGAATCCA
AGAAAGCCAGACCCAGTGGGGAATTTGGTCCAAATACTTATCAAATGACCTCCCTACAGGTTCA
CTGGGAGTATCAAAGCTGAGAAGGTACAGAACACGAGCCAGATGGCTTCTCGAATTAGAAACAC
CAAATTTAATGCCTTGAAGAAAGCAGCTAACAGCATATTCTAACCAAATTTCATCATGACTGTC
TTTATATGCCTGCAATGTGAAATCAACAATTAGTCCTCGCCTAAATTAAACATTGAAATCCAAA
GCATCAAAATCTGTAAATAGTACCATGTCACAATAATTTCCCCAGCTTATCCACCCTTTAGGCA
AATTTTTGAAAAGAGTGATGGCATTGGAGTATGCAACATTAGCCCCTTCTGAGTCATTTAATTT
TACTAGAAAGTCTCCTTTAATGCAACAAATTTCTGCCTTGTGTTTGACAGGAAAATATTCCAGA
TTAGTGCTGTTGATCAAATTAAGGCCAGTAGTAAGTTCTCCCTTCATTTCAAGGTATGTCTTTG
CCTGTTCTTTAATCTTAACGAAGGCCTC
						
					

			
		

Sequences
Splice junction sequence	ATTCCAGATTAGTGCTGTTGATCAAATTAAGGCCAGTAGTAAGTTCTCCCTTCATTTCAAGGTA TGTCTTTGCCTGTTCTTTAATCTTAACGAAGGCCTCctgatcactgaaatactgccctggaatc tctacgtcaactacatggaagtcccgtaacaccctgctttcctcctccagcttcagaacagcag gaaacctg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGATCACTGAAATACTGCCCTGGAATCTCTACGTCAACTACATGGAAGTCCCGTAACACCCTG CTTTCCTCCTCCAGCTTCAGAACAGCAGGAAACCTGTCCTCAACATTGCTCTGTAGTATATTTT TCCAGTGTTTTAGTCGTTCGGTCAGTTCAGAAAGTGTGACTGGAAAAGTTGTGGTACTTTCTGG ATCTAGATCACGCTCAAAATCCTGCTTGTACTCCCTAACAAAATCTACATGCTTGTTGACAGCA TCTGCAGAGAAGCAAGCCCGACACACACCAGAGAGCTCTTTCTTGAGAGATTGGGGAACTTCTG AGGTAGTAGCAGAGGGGTACTTGTAACAGCGGTGCAGCAGTGCATTGACCACTGCAAGAAGTCT CTCCTCAGGCAGAGTAACAAACCTTGAACCAATTTCGGTTAAGAGAACCTGTGAAGATGTAAAG GCTTAATTTTATAAAATTAAATTGAGATTGACTGAACGGTGTGGGAATAGAGCAAACATCACAG TTTTGATTTCATGGGTTATCCATATTTAAAATTAATGGACAATCACTTTAAAAAAATGCAGGTA GCTGGTCATGAAACAGAATGGTCGTTCACTTTTAATCAAGCTCCACTCTTAATATTCATGAGAT GTGTAACAGTAAACTGAATTCTGGTTTGTTATGAAGATCTGGTGTATGCCAAATCATAAAAGGG AAACTAAAAAGTTTAGAACAGAATTTCTCACCTCAAGCTCACCAGCCAAGTTAGCATGCTTGCT TCTCAAGGCCTCCATTATATCCTTAGCGGCATCAAATGCACTGGCAGCAGAAGCAACCAAACCT AATGCACCATTACGCCTCATTGTACCCTGCCCACCATCACTGATGCTTGAAGAACTTGGCTGCA GAGCTTGGTCATTTCCTGTGTGCACACTGCTCTCTGTTGCAGTGGATCGCTCAGGTTCATGCCC ATGAGAATTTCCCCCATCATGAGATCCAATTCCACTACCAGATTGAGAACCTTGATGAACTTGA TTATCTGGTGCTAAATTGCCTCCAGTATGACTCTGCACTCTAGCACTTCCATCAGCAGCCAAGA CAAGAGAACTAGGATTGGCACCAGAGATGTTCTGTTGCATTCTTTGCTGAGCCATGGCCATTCT GCCAAGTTCTGATTTATTTGCAACATCACGGCGCTCAAGCAAATAAGTCCGGAGCCAGTAATAG AGTGCCTGAGTTTTAAATGAAAAAAAATTAAAAATTTGCAATAGCTAAATGAGTAACGCACACA ATACATTTATTATGTGGGTGATTAGAATAAACATTTACCTGCGGATAAACGGTAGCTATTTTAA GAAGCACAAGTTTGCAATGAGGTGCTTCAGTCCGTTGCAAGGAAAGTAATAACTGTGGAATCCA AGAAAGCCAGACCCAGTGGGGAATTTGGTCCAAATACTTATCAAATGACCTCCCTACAGGTTCA CTGGGAGTATCAAAGCTGAGAAGGTACAGAACACGAGCCAGATGGCTTCTCGAATTAGAAACAC CAAATTTAATGCCTTGAAGAAAGCAGCTAACAGCATATTCTAACCAAATTTCATCATGACTGTC TTTATATGCCTGCAATGTGAAATCAACAATTAGTCCTCGCCTAAATTAAACATTGAAATCCAAA GCATCAAAATCTGTAAATAGTACCATGTCACAATAATTTCCCCAGCTTATCCACCCTTTAGGCA AATTTTTGAAAAGAGTGATGGCATTGGAGTATGCAACATTAGCCCCTTCTGAGTCATTTAATTT TACTAGAAAGTCTCCTTTAATGCAACAAATTTCTGCCTTGTGTTTGACAGGAAAATATTCCAGA TTAGTGCTGTTGATCAAATTAAGGCCAGTAGTAAGTTCTCCCTTCATTTCAAGGTATGTCTTTG CCTGTTCTTTAATCTTAACGAAGGCCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.539314459

Conservation Information
Conserved circRNAs	NA
PMCS	0.539314459

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							19314019-19312118(-)
19313861-19312116(+)
						
					

						Potential amino acid sequence
						
							MKGELTTGLNLINSTNLEYFPVKHKAEICCIKGDFLVKLNDSEGANVAYSNAITLFKNLPKGWI
SWGNYCDMAYKDSHDEIWLEYAVSCFLQGIKFGVSNSRSHLARVLYLLSFDTPSEPVGRSFDKY
LDQIPHWVWLSWIPQLLLSLQRTEAPHCKLVLLKIATVYPQALYYWLRTYLLERRDVANKSELG
RMAMAQQRMQQNISGANPSSLVLAADGSARVQSHTGGNLAPDNQVHQGSQSGSGIGSHDGGNSH
GHEPERSTATESSVHTGNDQALQPSSSSISDGGQGTMRRNGALGLVASAASAFDAAKDIMEALR
SKHANLAGELEVLLTEIGSRFVTLPEERLLAVVNALLHRCYKYPSATTSEVPQSLKKELSGVCR
ACFSADAVNKHVDFVREYKQDFERDLDPESTTTFPVTLSELTERLKHWKNILQSNVEDRFPAVL
KLEEESRVLRDFHVVDVEIPGQYFSDQEAFVKIKEQAKTYLEMKGELTTGLNLINSTNLEYFPV
KHKAEICCIKGDFLVKLNDSEGANVAYSNAITLFKNLPKGWISWGNYCDMAYKDSHDEIWLEYA
VSCFLQGIKFGVSNSRSHLARVLYLLSFDTPSEPVGRSFDKYLDQIPHWVWLSWIPQLLLSLQR
TEAPHCKLVLLKIATVYPQALYYWLRTYLLERRDVANKSELGRMAMAQQRMQQNISGANPSSLV
LAADGSARVQSHTGGNLAPDNQVHQGSQSGSGIGSHDGGNSHGHEPERSTATESSVHTGNDQAL
QPSSSSISDGGQGTMRRNGALGLVASAASAFDAAKDIMEALRSKHANLAGELEVLLTEIGSRFV
TLPEERLLAVVNALLHRCYKYPSATTSEVPQSLKKELSGVCRACFSADAVNKHVDFVREYKQDF
ERDLDPESTTTFPVTLSELTERLKHWKNILQSNVEDRFPAVLKLEEESRVLRDFHVVDVEIPGQ
YFSDQEAFVKIKEQAKTYLEMKGELTTGLNLINSTNLEYFPVKHKAEICCIKGDFLVKLNDSEG
ANVAYSNAITLFKNLPKGWISWGNYCDMAYKDSHDEIWLEYAVSCFLQGIKFGVSNSRSHLARV
LYLLSFDTPSEPVGRSFDKYLDQIPHWVWLSWIPQLLLSLQRTEAPHCKLVLLKIATVYPQALY
YWLRTYLLERRDVANKSELGRMAMAQQRMQQNISGANPSSLVLAADGSARVQSHTGGNLAPDNQ
VHQGSQSGSGIGSHDGGNSHGHEPERSTATESSVHTGNDQALQPSSSSISDGGQGTMRRNGALG
LVASAASAFDAAKDIMEALRSKHANLAGELEVLLTEIGSRFVTLPEERLLAVVNALLHRCYKYP
SATTSEVPQSLKKELSGVCRACFSADAVNKHVDFVREYKQDFERDLDPESTTTFPVTLSELTER
LKHWKNILQSNVEDRFPAVLKLEEESRVLRDFHVVDVEIPGQYFSDQEAFVKIKEQAKTYLEMK
GELTTGLNLINSTNLEYFPVKHKAEICCIKGDFLVKLNDSEGANVAYSNAITLFKNLPKGWISW
GNYCDMAYKDSHDEIWLEYAVSCFLQGIKFGVSNSRSHLARVLYLLSFDTPSEPVGRSFDKYLD
QIPHWVWLSWIPQLLLSLQRTEAPHCKLVLLKIATVYPQALYYWLRTYLLERRDVANKSELGRM
AMAQQRMQQNISGANPSSLVLAADGSARVQSHTGGNLAPDNQVHQGSQSGSGIGSHDGGNSHGH
EPERSTATESSVHTGNDQALQPSSSSISDGGQGTMRRNGALGLVASAASAFDAAKDIMEALRSK
HANLAGELEVLLTEIGSRFVTLPEERLLAVVNALLHRCYKYPSATTSEVPQSLKKELSGVCRAC
FSADAVNKHVDFVREYKQDFERDLDPESTTTFPVTLSELTERLKHWKNILQSNVEDRFPAVLKL
EEESRVLRDFHVVDVEIPGQYFSDQ(-)
MALEYATLAPSESFNFTRKSPLMQQISALCLTGKYSRLVLLIKLRPVVSSPFISRYVFACSLIL
TKAS*(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	19314019-19312118(-) 19313861-19312116(+)
Potential amino acid sequence	MKGELTTGLNLINSTNLEYFPVKHKAEICCIKGDFLVKLNDSEGANVAYSNAITLFKNLPKGWI SWGNYCDMAYKDSHDEIWLEYAVSCFLQGIKFGVSNSRSHLARVLYLLSFDTPSEPVGRSFDKY LDQIPHWVWLSWIPQLLLSLQRTEAPHCKLVLLKIATVYPQALYYWLRTYLLERRDVANKSELG RMAMAQQRMQQNISGANPSSLVLAADGSARVQSHTGGNLAPDNQVHQGSQSGSGIGSHDGGNSH GHEPERSTATESSVHTGNDQALQPSSSSISDGGQGTMRRNGALGLVASAASAFDAAKDIMEALR SKHANLAGELEVLLTEIGSRFVTLPEERLLAVVNALLHRCYKYPSATTSEVPQSLKKELSGVCR ACFSADAVNKHVDFVREYKQDFERDLDPESTTTFPVTLSELTERLKHWKNILQSNVEDRFPAVL KLEEESRVLRDFHVVDVEIPGQYFSDQEAFVKIKEQAKTYLEMKGELTTGLNLINSTNLEYFPV KHKAEICCIKGDFLVKLNDSEGANVAYSNAITLFKNLPKGWISWGNYCDMAYKDSHDEIWLEYA VSCFLQGIKFGVSNSRSHLARVLYLLSFDTPSEPVGRSFDKYLDQIPHWVWLSWIPQLLLSLQR TEAPHCKLVLLKIATVYPQALYYWLRTYLLERRDVANKSELGRMAMAQQRMQQNISGANPSSLV LAADGSARVQSHTGGNLAPDNQVHQGSQSGSGIGSHDGGNSHGHEPERSTATESSVHTGNDQAL QPSSSSISDGGQGTMRRNGALGLVASAASAFDAAKDIMEALRSKHANLAGELEVLLTEIGSRFV TLPEERLLAVVNALLHRCYKYPSATTSEVPQSLKKELSGVCRACFSADAVNKHVDFVREYKQDF ERDLDPESTTTFPVTLSELTERLKHWKNILQSNVEDRFPAVLKLEEESRVLRDFHVVDVEIPGQ YFSDQEAFVKIKEQAKTYLEMKGELTTGLNLINSTNLEYFPVKHKAEICCIKGDFLVKLNDSEG ANVAYSNAITLFKNLPKGWISWGNYCDMAYKDSHDEIWLEYAVSCFLQGIKFGVSNSRSHLARV LYLLSFDTPSEPVGRSFDKYLDQIPHWVWLSWIPQLLLSLQRTEAPHCKLVLLKIATVYPQALY YWLRTYLLERRDVANKSELGRMAMAQQRMQQNISGANPSSLVLAADGSARVQSHTGGNLAPDNQ VHQGSQSGSGIGSHDGGNSHGHEPERSTATESSVHTGNDQALQPSSSSISDGGQGTMRRNGALG LVASAASAFDAAKDIMEALRSKHANLAGELEVLLTEIGSRFVTLPEERLLAVVNALLHRCYKYP SATTSEVPQSLKKELSGVCRACFSADAVNKHVDFVREYKQDFERDLDPESTTTFPVTLSELTER LKHWKNILQSNVEDRFPAVLKLEEESRVLRDFHVVDVEIPGQYFSDQEAFVKIKEQAKTYLEMK GELTTGLNLINSTNLEYFPVKHKAEICCIKGDFLVKLNDSEGANVAYSNAITLFKNLPKGWISW GNYCDMAYKDSHDEIWLEYAVSCFLQGIKFGVSNSRSHLARVLYLLSFDTPSEPVGRSFDKYLD QIPHWVWLSWIPQLLLSLQRTEAPHCKLVLLKIATVYPQALYYWLRTYLLERRDVANKSELGRM AMAQQRMQQNISGANPSSLVLAADGSARVQSHTGGNLAPDNQVHQGSQSGSGIGSHDGGNSHGH EPERSTATESSVHTGNDQALQPSSSSISDGGQGTMRRNGALGLVASAASAFDAAKDIMEALRSK HANLAGELEVLLTEIGSRFVTLPEERLLAVVNALLHRCYKYPSATTSEVPQSLKKELSGVCRAC FSADAVNKHVDFVREYKQDFERDLDPESTTTFPVTLSELTERLKHWKNILQSNVEDRFPAVLKL EEESRVLRDFHVVDVEIPGQYFSDQ(-) MALEYATLAPSESFNFTRKSPLMQQISALCLTGKYSRLVLLIKLRPVVSSPFISRYVFACSLIL TKAS*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.007G195100_circ_g.1

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