Detail information of Os04g0559800_circ_g.2


General Information
CircRNA Name Os04g0559800_circ_g.2
ID in PlantcircBase osa_circ_024848
Alias NA
Organism Oryza sativa
Position chr4: 28051689-28051945  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0559800
Parent gene annotation Similar to YDA. (Os04t0559800-01)
Parent gene strand -
Alternative splicing Os04g0559800_circ_g.3 Os04g0559800_circ_g.4 Os04g0559800_circ_g.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CC-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACATTTCCATATCCCATTCACTCATGGCGAAAATCACCATAATTAGGTTATCTATATTATAG
AACAAATAAACTGTGCCTCAGAAGTATAATACTAACatgccaaagttgcttcggtgaaacttcc
aagtctcattacgagtcaaaagaaggaagtctttacatttcaagcacctttcataaaattgcat
gcaagtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGCCAAAGTTGCTTCGGTGAAACTTCCAAGTCTCATTACGAGTCAAAAGAAGGAAGTCTTTAC
ATTTCAAGCACCTTTCATAAAATTGCATGCAAGTAAATGATCTTTCAACATTCTACATCAGACA
GTGATAAATTCTTAAAGAATTCATGAAAAGAACATTTCCATATCCCATTCACTCATGGCGAAAA
TCACCATAATTAGGTTATCTATATTATAGAACAAATAAACTGTGCCTCAGAAGTATAATACTAA
C
Conservation Information
Conserved circRNAs NA
PMCS 0.12872847
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017