Detail information of Os02g0632500_circ_g.8


General Information
CircRNA Name Os02g0632500_circ_g.8
ID in PlantcircBase osa_circ_015703
Alias Os_ciR7927
Organism Oryza sativa
Position chr2: 25336766-25340389  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os02g0632500
Parent gene annotation Arf GTPase activating protein family protein. (Os02t0632500-01)
Parent gene strand +
Alternative splicing Os02g0632500_circ_g.9
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0632500-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGTGCGGATATTAATAAGCAAGACTTCCATGGACGGACACCGTTGCACCATTGTGTCCGAAG
GAAAAATGATGCACTTACCAAGCATCTGCTAAAGAGgtgtcgtatggaaatctagaggcggaac
atcatggttctgcaaattctgttgattctctctctcttgaggagaacaaaagtccagagggaca
tgatgata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 878
Transcript exons: 25336766-25337014,25337893-25338014,25338642-25338732,25
339974-25340389
GTGTCGTATGGAAATCTAGAGGCGGAACATCATGGTTCTGCAAATTCTGTTGATTCTCTCTCTC
TTGAGGAGAACAAAAGTCCAGAGGGACATGATGATATATTCAATCATCTCAGGAATATTCCTGG
AAATGACAGTTGTGCAGAATGTCGTTCACCGGATCCTGATTGGGCATCTCTAAATTTAGGAATT
CTTATTTGTATAGAGTGTTCTGGGGCTCACAGGAATCTTGGAGTCCATATTTCGAAGGTTCGAT
CCTTGCGATTAGATGTCAAGGTATGGGAGCCAGTGATAATGGACTTGTTCCATGAACTTGGAAA
TGACTACACTAATTCCATTTGGGAAGCTATGCTTCCGAAAGAAGATCAAGGAATAAACGAGTTT
AATGATGCTATTCTTTTCATTGAAAAGCCTAAACCTACTGATGCTTTTTCAATAAAGGAAAGGT
ACATACAGACAAAGTATGTCGACAAGCTTCTTATTGCCAAAGATACCAATCAAATTACCATTGA
TATATTGGAGGCTGTAAGGACGAATGATGTGAGGGCAGCATATCGCATTCTTGTGTTGGCTGAT
GTGAGCCCTAACATGATATATGATGAGTTAAACAATGATGTTCATCATGATCCTTCAGTAACAG
ATGGGAAGTTATTTGATCCAGCATCTTGTGATGTAAAGGATGATTCTGGGAAACCAGAAGGTTG
TCTACAAGGCTGTTCCCTGTTGCACATTGCTTGCCAATATGGCCATTCTATAATGGCAGAGCTT
CTGCTTCTTTTTGGTGCGGATATTAATAAGCAAGACTTCCATGGACGGACACCGTTGCACCATT
GTGTCCGAAGGAAAAATGATGCACTTACCAAGCATCTGCTAAAGAG

Genomic sequence GTGTCGTATGGAAATCTAGAGGCGGAACATCATGGTTCTGCAAATTCTGTTGATTCTCTCTCTC
TTGAGGAGAACAAAAGTCCAGAGGGACATGATGATATATTCAATCATCTCAGGAATATTCCTGG
AAATGACAGTTGTGCAGAATGTCGTTCACCGGATCCTGATTGGGCATCTCTAAATTTAGGAATT
CTTATTTGTATAGAGTGTTCTGGGGCTCACAGGAATCTTGGAGTCCATATTTCGAAGGTGTGAA
CTCTGTCACTTGTTCTTTCTTTTTGAGTCTAATTTATGCTACTTCATTGAAAGTTACGTTTTTG
GTGACCTGACCCTGTCTTTCACAGGAAAGCACTTCAAAATTTTAAACTCATAAAAGTTATAACT
TAGCCACGGTAGTAGTATAAAACTGTAATATAATAGTGGAACCATTTAAAGTTTAATGCTTATG
CTATTGCCATTAATCATTACTGAAATGATTGGGGCTTAATGTAATGTTGTAAACTTTGTCAATG
TCCAAAACATCGAGTAAAAAGGAATGGTGGATTGGTGGTAATAAATCAAATTAGAAGCAGAAAG
CTTGGATAAGATCATAAGAATATCGACTCCAACCTCTGTTAACCTTCGACTCTTAAAATGAGAT
CCAGGCTGTGGTACCAACCTAGGCAATTCACAGTATCTAATTCACATGTTTTATCATTATTTTC
TGACTATATATTTATAGAAATATTAAAAACATAATTGTATGAAAGTGTTTTTTTTTTCATGAAC
AATCTACCAAAACCATTTTCACATATCCTGATACTTATGCATCTATTACCAACTCCATGTAGTT
ATCAGTCACAGTTTCTTGTGATAATGCTATATGTACTTGATATAATACCTTAATGATAATTTGA
TGGAAAGATTAACTATTTTATTTTAGATTTTTGCTCATTTGTGTTTCTTGTTGTACCTTTCAAT
TGTATTTTCTAATGCATATAAGATGGTCAGAGCTAAGAACATTAATTTTGCAATACACTCTCTT
GTGACTTTGTGATTTGTAGATTTCAAATATCATTTGATTTTCAGATTTAGCAGTAGTGTGGTCC
ATATTTAAGGATTGCTTTTGATGTACTTATTTGATGTAGGTTCGATCCTTGCGATTAGATGTCA
AGGTATGGGAGCCAGTGATAATGGACTTGTTCCATGAACTTGGAAATGACTACACTAATTCCAT
TTGGGAAGCTATGCTTCCGAAAGAAGATCAAGGGTATGTTGAAGTGTATGTAAATGTATATTTT
CTTAACTATGTTTTGCCTTCATGCTTTAGACAATTTTCTTCCTAGTTACACCTCTCTTCTGAAA
TTTGTAAGTAGTGGTATATTGACTAATACAAACATCAGCCAATATGCTTTTTGCCAAACTGGAC
CATGTGTACCAACTAGTTTTGTACTTCTGCATGTATTGTTTAGTCATTTTATTTTCTTTTATTT
TACTCATTGGATTATTGTCAATTTAAGGAGCATAATACTGCACTACCGCATTTGTAATGGACTA
TAGCATTCTTGACTTAACTCAGACTTGAAATTTCCAATGGGATATTCTGTCTTGCACTGAAATG
GATCAGTTTCATTATGGTAGGTGAATATAATCAGTGTAGCTAAGGAAGGTGTTCTATCATTTAG
AAATGTTAATGCTAATAATTTCATTCACACGTTCAAGATAGGTTAGCTTTATTATCTTCTACAG
ATGAGTTGGAAGATCTCTCTTTTAATCTGATAGTGCCAATGAATATATTTCATACATTAATGGC
ATTGGCATCAGACATGTTCATTGTGTGTGGAAAAACTAAGTTTGCTCCTTTCTCCTATCTATTT
TCTTCTTGATGTGTATGCAGAATAAACGAGTTTAATGATGCTATTCTTTTCATTGAAAAGCCTA
AACCTACTGATGCTTTTTCAATAAAGGAAAGGTACATACAGACAAAGGTAAATTATTCTGTCCA
TCCTTTTATATGCTGAACCTAGCAATGCTTTCTTGATATTGATGTATATCCTTGTTAGTCATGT
GCTAGTTGAAGATTGAATTCCAATGTAACCCTTGCCTTTTATTTTATAAATGTGTTGTTTTGCT
ATCCAGCTTCAGTTCTGTAGCTACGACTCACATGACTGATATCACATAAATCTTTTGGGAGGCT
GGGGATGTTCACATGCACATATATTATATATAGTTAGCAGCAGTTGTATGGATCATGGGAAATC
TTTATGATGTAACCATTTTACACTTTACTAGCACAATAGCCATGCGTTGCAGCAGTTTATTTAA
TATAAAACATAATTATGAGTTCTCTTAGTAAAAGAATATCTTGCCTCTACTTGGGTGAAGCGAT
GTTCTTCATCTTAAAAGGCAAAATTAAAAGAGTGTAGCTTATGTCTTGCTCAAATTTCAAATGG
ATGGTAAACAGAAGAGAGCAATCAAATTGCTCGTGTGGGGTCCACCAATCTCATGGGCCCACAT
GTTAGTTGGTGGTGGCGGAGGCAAACTCACCACCACCACTATGGTCTTTTATAAGAGCATAGAT
ATAATTGGAGCCAGAACTCAGTCTATGGATTGGTTCACAACCAGATTTGTAGTTTGATTTATCA
TTTTATTTTCTGACTGTACTGTTTTTTTGACTGAAAGTACTGCCAGGTCTTTGCCCAGCAGTGT
GATTTTCAATTATTGAAAGAATAATTATAGGAAATAATTACAGGAAGAAACAAGAGAAAAAAAC
AAAAGACCCTATAAAGTTTGTAACCAATTAACAACAGATTGCTTCAGGAGATCCTTCATTCTGC
AGAGATGCAGAAGAATCTCATTTGTAAAGAGAGACTTCCAAGAATGGAACTGTTGCGGTCAGGG
TACAAATACTGAAGATAATTGATAGAACATGAATGAATTGCATACTTAACAATTAACCCTTGGT
ATTTCAACTCTAAAACTTGCATAATTGATCAATGGCTGGCCGGAAACCACAAGCTTTTGTAGTG
TGATCCATATGCAACGAAGTGTCGAGTAATGCAGGCTGCAACAACCCTCAAGTTCTTTTTTGCT
TCAAATAGTTTCTATTGCTAATTTTGATAGTATTAACTTCATGTATGAATGGAAGATTTAGAGC
TCCCTGTTTTCTTGATTCTGATGACCTTCTGTTTGTTGTGCCATCATTAATTACTGTAAATGAT
CTATGCAGTATGTCGACAAGCTTCTTATTGCCAAAGATACCAATCAAATTACCATTGATATATT
GGAGGCTGTAAGGACGAATGATGTGAGGGCAGCATATCGCATTCTTGTGTTGGCTGATGTGAGC
CCTAACATGATATATGATGAGTTAAACAATGATGTTCATCATGATCCTTCAGTAACAGATGGGA
AGTTATTTGATCCAGCATCTTGTGATGTAAAGGATGATTCTGGGAAACCAGAAGGTTGTCTACA
AGGCTGTTCCCTGTTGCACATTGCTTGCCAATATGGCCATTCTATAATGGCAGAGCTTCTGCTT
CTTTTTGGTGCGGATATTAATAAGCAAGACTTCCATGGACGGACACCGTTGCACCATTGTGTCC
GAAGGAAAAATGATGCACTTACCAAGCATCTGCTAAAGAG
Conservation Information
Conserved circRNAs osi_circ_004124* osi_circ_012035
PMCS 0.317165572
Functional Information
Coding potential Y
Potential coding position 25337939-25336781(+)
Potential amino acid sequence MDLFHELGNDYTNSIWEAMLPKEDQGINEFNDAILFIEKPKPTDAFSIKERYIQTKYVDKLLIA
KDTNQITIDILEAVRTNDVRAAYRILVLADVSPNMIYDELNNDVHHDPSVTDGKLFDPASCDVK
DDSGKPEGCLQGCSLLHIACQYGHSIMAELLLLFGADINKQDFHGRTPLHHCVRRKNDALTKHL
LKRCRMEI*(+)
Sponge-miRNAs osa-miR2105
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015