Detail information of BGIOSGA017301_circ_g.4


General Information
CircRNA Name BGIOSGA017301_circ_g.4
ID in PlantcircBase osi_circ_014971
Alias Chr04:34426307_34426820(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 32916211-32916724  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA017301
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   AT-CA
Number of exons covered BGIOSGA017301-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCATCTCTTTTAGTAGTCGCAGTACAAACTGTACAGATGTATGCTAATTTCTTGCATTCTCTC
GTTACCCTAGGTTTTCGGATTATTATTGGTTATCTTggtaactgaatgtgctccaattcacagg
ccatctgcttgatgctaccaagagattacaatatgttgcaacatttacttgagatgttcaacaa
agaaaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAACTGAATGTGCTCCAATTCACAGGCCATCTGCTTGATGCTACCAAGAGATTACAATATGT
TGCAACATTTACTTGAGATGTTCAACAAAGAAAATGAGTTGCTCGAGTTAGCAGCTATGTTAGG
TGTTATGCGGTATCATAGTCTCTATCTCGAATAAGGCACATTAGATTTACCAACGGATGTTATG
CTATAACTTTTAGGTTTAAAGACTTGCATTAGGCTATCTACCCTTGAAATGGAGCTACACTAAT
GTTAAAAATGGCTACATTTGTCCTTACAGTCTTTTAAAAGCACAGCTTTGATCAAGATAGTTTA
TCTGTTACCAAGGTGTTCTTTAATGAGCTACCTTATTCACTTATCTTATTTCGTCTCTTATATT
GCTTAGACTAATAATTTTGTTTTATCATCTAGCATCTCTTTTAGTAGTCGCAGTACAAACTGTA
CAGATGTATGCTAATTTCTTGCATTCTCTCGTTACCCTAGGTTTTCGGATTATTATTGGTTATC
TT
Conservation Information
Conserved circRNAs osa_circ_025817 osa_circ_025816
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021