Detail information of BGIOSGA016315_circ_g.1


General Information
CircRNA Name BGIOSGA016315_circ_g.1
ID in PlantcircBase osi_circ_014315
Alias Chr04:20175380_20177148(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17425198-17426962  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA016315
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA016315-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACCATGAGAGGCATGCACCTGGGGATCCCAGCAAGCGTGCATTTGCTTACTTTGTTCTAAGT
GGTGGGAGATTCATCTATGCATCGTTGCTGCGGCTCcaacggcaacggccgggtccagccgcgg
ttctccatcgagtccccgttcttcgccgccgccagaggtacggccgcgccctagatttggtccc
ggattttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAACGGCAACGGCCGGGTCCAGCCGCGGTTCTCCATCGAGTCCCCGTTCTTCGCCGCCGCCAGA
GGTACGGCCGCGCCCTAGATTTGGTCCCGGATTTTTTTTTGGGGGGGGGGGGGGGGGGGAGGGT
CGCCCTGATCTAAGATGGATGTAGCGTGGCCGATCCGTCTAGAGATGTGATCCCGCTCGCTAGA
ATTCCTACTGCTTTCGTTGTGGGGGGAGCTCCGCGTTGATCCATTTTGTCGTTGATGTCGGCGA
TTATTCTAGCGTGCGTGGCTCGTCCCATATCGATGACCTAGCTGCATACGACGAGAGGCTAATA
GATCGTCCGCGATGTCTCCGCTGGATTGAGTAATTCTGCGCTTGGACTCTGCTTGCTGCGCTTG
AATGATCTTTGTGCTTAGGTGCCATCTGCCTCTATAAAGCTTGCCCTTTTTTTTTAGCTTTTTA
TTATATATATATATATATATATATATATATGTTACTAGTGGTAGTTCTTTTGGAATCCACCCTT
GAGACCTTAACTTCATCCATTCCTGACAAGCGAACACCTCCACATGAGTGCAACATGCGAACCC
CTCCACATGAGTGCAACATGCTGTACCTGGCTAGTTGAAACTTGAAAGTGGAATGGATTGTGAA
CATAATAAAATGGATGCTTTGCGCTTCGATGTCAATTTCGAGTTTACAGGTGGAGGATGATAGG
CATTTTAAAAACCATCTTTTTCTATACTGTACATAAGAGTCCCCAATATCTTACTTAATCTCCT
GTATTATTTTATTTAGTTTACCCTTGTTTAGTCTTTTCTTGCCTATCAAATGGCTTCTACTGTT
TCCTGAAGTTGCTGTAGAAGTCTATGTATGCGTTTGTAATGTGGTATTTATTATGTTTTCATCA
ACTGCCTTGTGTCATTTTGCATCTGGTGATTTTCTCATGTCAATGACTACTGGTAAACTGTGAT
TTTTTGGAGTTAAGATCATTATATTGATAACACCCAGCCTTTGGAAGAAAGCCAAAAGGTTTAG
GTAGACTGATTTTTTTTAGAGTTAAGACCATTATATTTGATAATGATTCGGCCTTTGGAAGAAA
GCCAAAAGGTTTAGGTAGATTGTGATTTAGTTTATATGTTTCTACTGTATATGGCTATATGCTT
CTTAACAGAGGATAACATTGTATAGAAATAGCATTTTTGCATGCTGTTCTGTATATTCTTTTAT
TCTAAAACCTGCAAGAGTAGCACATACTCTGTTTTAGATATCTGTTAACTGTCGATGAGGATAG
TATTACACCAAATTAAATGAATATTCAAACAACAGTAATTTTTCAGATCTACAGGAAATGAGAA
TTACCGATGTTCAATATTGCTGTTTATCTTGTGCAATTACATCCCTGCTAAGATGTTATTCCTA
TCGCTGCCAACCTCTACTAATTAGCTTATCCTTTGTTTGTGCTGACACTGAATACAGTAGTAGT
TTGCTTTTTGCAATATTATACTGCAATTATGCTGTTAACAATGTTTGTCTTTTATTGAAATGTG
TTGTTCTCATGTAGGGTTTTCTTCATCTGAAACACTTGTTCCAAGGAACCAAGATACTGGCTTG
GCTGAACTACCTGCAACCGTTGCTGCACTGAAGAATCCCAACCCAAAGGTGGTGTACGATGAGT
ACAACCATGAGAGGCATGCACCTGGGGATCCCAGCAAGCGTGCATTTGCTTACTTTGTTCTAAG
TGGTGGGAGATTCATCTATGCATCGTTGCTGCGGCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021