Detail information of Os04g0524600_circ_ag.1


General Information
CircRNA Name Os04g0524600_circ_ag.1
ID in PlantcircBase osa_circ_024613
Alias Os_ciR3919
Organism Oryza sativa
Position chr4: 26249655-26254265  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCATCGAGAGGGTGGGCTTCCTCAAGCAGCCCTTCACCCGCCAGGAGAACACCGTCATCCAGA
CCTGCGTCGTCTCCGCCTACGGCGTCGCCTTCAGCGgtgggtttggcacatacttgtttggtat
gagtgaaacaattgctaagcaagcaacagaggctaataatgctcagaatgtcaagaaccctcac
atcgggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGGTTTGGCACATACTTGTTTGGTATGAGTGAAACAATTGCTAAGCAAGCAACAGAGGCTAA
TAATGCTCAGAATGTCAAGAACCCTCACATCGGGTGGATGATTGGATTCCTCTTCCTCGTCAGT
TTTATTGGGCTACTTGCTCTTGTGCCTCTGAGAAAAGTAAAGTCTTCTACCTGTTTCGGACTTA
CAGATTCGCAAGAATTGCTGTTTACTAATCAACTGATTTTTTTTTCAGATTATGATTGTCGACT
ACAAACTGACCTATCCAAGTGGCACGGCAACAGCTTATCTTATCAATGGCTTCCACACCCCAGA
GGGTGCAAAGCTTGCTAAGTAAACCATCTGACTGTTCTACTTTTTGCTACTGCTATATTTCCTT
AGTGCCGTAAATTAGCATGACATGAGTGGAACAGAGTTACTGACAACATAGTTTTATGCTTCAG
GAAGCAAGTAAAGGAACTGGGGAAATTCTTTTTGTTCAGCTTCGTTTGGGGCTTCTTTCAGTGG
TTCTATACTGCCGGAGATGGTTGTGGATTCCAGAGCTTCCCTACATTAGGCCTTCAAGCCTATA
AAAACAGGCAAGAAGATTGATTTTCGATGCCTATATCTTGGGTTTGAATGATGACACATTTGAG
TGTTAGATGTCTAATATTAGAAAATAGCTTAGTGTTTGTTGGGGGAGTGACTTCGCCAAATTTC
ACCCATAGGGATTCCTCCTTCTATAGACAAGAAGGCTCCGTAGGATCCTCCGAACTGGAGTCCG
CAGGTGCCTGCGGAGGGGCTCCGAAAGGACCCCCGAGGGTCCCTCCCCTCTCGATCCGTGCTTG
ATCCTTGTTTGATTCTGTTCCAACACTGTTCTGAATGTATTTGGTTAGAACACTGAACAGCTTA
CCTTGCTGAACTTCACAATTTCACATTCCATCTTTCAGGTTTTACTTTGATTTCTCCCCTACCT
ATGTTGGAGTAGGGATGATTTGCCCCCACATTGTGAACGTATCTGTTCTATTGGGAGGCATCCT
CTCATGGGGAATCATGTGGCCCCTGATAAGAAACAAGAAAGGGAGTTGGTATGCTGCCTCTCTC
TCAGAAACTAGTCTTCATGGACTGCAAGGCTACAGGGTAAGTAAACATTCAAAAAAAAAAAATC
CTCCCTTTTGCTGCTATACAGCTATAGTTGATAGTTACCAAGCAGCTAATGTGGTGTTCCTGAC
TACTGCAGGTGTTCATATCCATTGCCTTGATTCTTGGAGACGGCCTGTACAACTTCGTGAAGGT
GCTCATCCGCACAACCGCTGGCTTCGTCGTGATGATGAAGAAGAACAGCACGCTTCCGGTCTCC
AACAATGGCAGCCCGATGGTGGCCACTGAAGCCATCTCCTTCGACGACGAGCGCCGCACCGAGC
TCTTCCTCAAGGACCAGATCCCCAAGACGGTCGCGTTCGGGGGGTACGTCGCCGTCGCCGCCGT
ATCGATCGGCACGCTCCCGCAGATCTTCCCGCAGCTCAAGTGGTACTACATCCTGGTCGCCTAC
GTCTTCGCGCCCGTGCTGGCCTTCTGCAACGCCTACGGCGCCGGGCTGACGGACTGGTCGCTCG
CGTCCACGTACGGCAAGCTCGCCATCTTCATCTTCGGCGCGTGGGCCGGCGCGTCGAACGGCGG
CGTGCTGGTCGGGCTCGCCGCCTGCGGGGTGATGATGAGCATCGTGTCGACGGCGTCCGACCTG
ATGCAGGACTTCAAGACGGGGTACCTGACGCTGGCGTCGCCGAGGTCCATGTTCGTCAGCCAGG
TGATCGGCACGGCGATGGGGTGCGTCATCGCGCCGTGCGTCTTCTGGCTCTTCTACAAGGCCTT
CGCCGACATCGGCGTGAGCGGCACCGAGTACCCGGCGCCGTACGCCATCGTGTACCGGAACATG
GCCATCCTCGGCGTCGACGGCTTCTCCTCGCTGCCCAAGCACTGCCTCACGCTGTGCTACATCT
TCTTCGCCGCGGCGATCGCCATCAACCTGGCAAGGGACCTGGCGCCAAGCAAGGTGGCGAGGTT
CATCCCGCTGCCCATGGCGATGGCGATCCCGTTCTACATCGGCTCCTACTTCGCCATCGACATG
TTCATCGGCACCGTCATCCTCTTCGTGTGGGAGATGGTGAACAAGGCCAAGGCGGAAGCGTTCG
CGCCGGCGGTCGCCTCCGGCTTGATCTGCGGCGACGGCATCTGGACATTGCCGCAGTCCATCCT
TGCCCTCGCCAAGGTGAAGCCGCCGATCTGCATGAAGTTTCTGTCGCGATCGGTGAATGCGCAA
GTGGATGGTTTCCTGGGTAACTAGATGTGATCAGCCTGAAATCATCGCCAATGTGAACAACCAC
TCTGTATCATCTGTGTCATCATCCTGCAATCTCGGTTTCAAAAAAAAAAAATCATCCTGCAATC
AGGATATCGTATGTTCTGTTAGGGATTGTACTATAATCTGTCTCTGAACACCTGTATATGTTAG
TGGAGTGTGACAATCATCCTTGAATCCTTGATTCCAAATTTCCAGTGTTGTAATTGTATATATA
TTCCTGCAATCATCAGTAAGTGGCGTTCTACTGTCTCCAAATCAACTTTGACTACTAATTTCTT
TTGTGGCATATGGAGTATTTACTATTTACTGAAGTTCACAATGTTTAACGCAGACAGCCCCAAA
TGTTAGGGGTGACAGTGTACTATACGCCATCCTTCAAATTATAGAAAAAAAATAATAGTGTGAC
AGAGGATTGAAATAAACTACCTCTAAAGTATGAACATTATGGATAGACATGGCCAATACAGGAG
TAACACAACATTCTAACCGAAGAAGAATAATAGATGGTTCCTTAACTTAGCTTGCTTAGCCTGG
AAACCTAACATTTAAACCGTTTAAGGCCATGCATTCGGTTCAGGTGGAGAGGGAGCAGCACAAA
GGGAAAGCTTTGCGGAGGAGAGCTGCTTTGGCTCTTATAGGCAAGCATCCCAGTTCCATCGTTC
ATGCAGCACAAAAAGGAAAGCTTGCAGAGGAGTGTTGTTTTGGCTCTGCCCTATATGCAAGCAT
TTTCTAACACGCCGGATTGTTCTTTTCAGTTTATTCATTGGATTATTACCGTGAATTATTTGAT
GTGTAGTTCGGAAAAAAAATTTAAAAAGAAAATATTTCTATATTGTTTAGACCCCTTATTCTAT
GCTATTTATTAAGTTTATTTTTTAAAAAATGATTTACCCTTCAAAAAATAAACAATCTACGACA
ATAATATGGTGAACGATGCATTTCAAAGTGTACTTATTCCATCCTTAAAAAAACCAACTTCTAA
AGATGAATATGGGCAATCACTTGTTTAAATTCATTCTAAAATTTATTTTTTATAAGACGGAAGA
TATACCTAAGAAAGAATGAAAGCAGTAAATGCAATTGACATCCAAATTCCAACCTGTGACTATT
ACACCGTCCATAACGAGGAAAGATATCCCATGATGCTTGACTATAAATGTTTACAGCCAACAGG
AAATTAAACTGACGTCCTCAATATCTGTGGCGCTATATGGTTTATCTTAACAAAGCCAGCAGGA
AATACCTAACATCCAAACGTGCTGTAATAGGAAACGGATGATAAAAAAGAAATATATCTCTTAA
TCTCCGAATAGTTTTTTTTTTAAAAAAATATATATCTCCCAATAGTTTAAAAGTTGATGGTTTA
TCGCAACCTGGTTCACAATTTCGATATGGGATCAAAACCTCTCACAAGCAGTTTCATTGGATTT
TACAGAACCCGTCGATAAACTGACAAAAACCAATGAAATCTAGATAAATCTTGTTAAAAATTTT
AAATAATTTTTGAACTTAACCGAAAAATCGAGCGGTTTGTGCTTTAGACCCCGTCCGAAAAGTC
CGGTTTCCACAGGAACTGTAAACCGTGATCGCAACCGGGAGCCAAACGTGCTGTAATAGGAATC
TGGGCCATTCGATTCAACAGGAGATAGACAGAAAATCCAAACGGCGCAGCACCTGACCTGGCTA
GACGCAGCTGGCAGATCGTATCTCGTCGACCTCCATCCAAACGGCCTCTCCATATAATCCCGCA
CACACCACCACGTGTGTCCTCTCGTAGCAAAACCCTGAGACGACGAGGGACTAGCTAGAAGAGA
TCGATCATGGCGTCGGCCGCCGCCAACAACAGTAGCTCGGCCGCCTACGATGCGGCGGAGACAG
GCGGCCTCCTCCGCCGCCGCAACACCACCGCCGCCGCCCGCGGCAATGCGGGGGAGGAGGAGGA
GGAGGCGGAGGCGGTGGCGCCGTCCGTGGAGCAGGCGTTCGCGGACAAGCCCGTGCCGTCGTGG
AGGGAGCAGCTGACGGTGCGCGCCTTCGTGGTCGGGTTCCTCCTCTCCATCATGTTCAACATCA
TCGTCATGAAGCTGTCCCTCACCACCGGCGTCATCCCCTCGCTCAACGTCTCCGCCAGCCTCCT
CGGCTTCTTCCTCGTCCGCCTCTGGACGGCGGCCATCGAGAGGGTGGGCTTCCTCAAGCAGCCC
TTCACCCGCCAGGAGAACACCGTCATCCAGACCTGCGTCGTCTCCGCCTACGGCGTCGCCTTCA
GCG
Conservation Information
Conserved circRNAs NA
PMCS 0.509551377
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015