Plant Circular RNA Database

Detail information of Os05g0558400_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0558400_circ_g.1
					
						ID in PlantcircBase
						osa_circ_028888
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 27779978-27783854  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0558400						
					
						Parent gene annotation
						
							Similar to Branched-chain-amino-acid aminotransferase 3, chlorop
last precursor (EC 2.6.1.42) (Atbcat-3). (Os05t0558400-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0558400_circ_igg.1 Os05g0558400_circ_igg.2 Os05g0558400_circ_g.3 Os05g0558400_circ_igg.4 Os05g0558400_circ_g.5 Os05g0558400_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0558400-01:9

General Information
CircRNA Name	Os05g0558400_circ_g.1
ID in PlantcircBase	osa_circ_028888
Alias	NA
Organism	Oryza sativa
Position	chr5: 27779978-27783854 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0558400
Parent gene annotation	Similar to Branched-chain-amino-acid aminotransferase 3, chlorop last precursor (EC 2.6.1.42) (Atbcat-3). (Os05t0558400-01)
Parent gene strand	+
Alternative splicing	Os05g0558400_circ_igg.1 Os05g0558400_circ_igg.2 Os05g0558400_circ_g.3 Os05g0558400_circ_igg.4 Os05g0558400_circ_g.5 Os05g0558400_circ_g.6
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0558400-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGTGTCAGTAGATGAGCTGCTTGAAGCTGATGAGGTTTTCTGCACAGGAACTGCTGTCGTAGT
GTCTCCTGTGGGTAGTATTACCTATCAAGGGAAAAGccactgccatttgaggcccacacagcgt
tggccccaccagtcggtctcacatcggctacaatggctagaaggttctgtgagtaaagccgctt
ccccattt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1358
Transcript exons: 27779978-27780337,27780592-27780680,27780819-27780993,27
781115-27781291,27781387-27781518,27781790-27781888,2778
2302-27782418,27783252-27783347,27783742-27783854
CCACTGCCATTTGAGGCCCACACAGCGTTGGCCCCACCAGTCGGTCTCACATCGGCTACAATGG
CTAGAAGGTTCTGTGAGTAAAGCCGCTTCCCCATTTGGCCCCCGTGCCATTCCCGTCCGATTTG
GCCATCGTCGTCTCCGTCTCCGCTGCGTCTCCGCTGCCTCTCCCGCGCCGCCGCCGTCGCAGTA
GCCGCAGAAACCCTAGACCCCGGCGAGAGAGCGGGGGAGCTCACGGGAGAGCAGCAAATGGAGT
ACGGTGCAGCAACGCGTGGCGCGCTCCTCGCGGCCGCCCCGCTCTCCGGCGCCCGGCGTAGCTG
GTTGCCCCTCTCATCGCCGCCGTCGCCGCCCTCTATTCAGATTCAGAATCGACTTTATTCGATA
TCGTCGCTTCCACTAAAGGCTCGAGGCGTGAGAAGATGCGAGGCTTCTCTAGCAAGTGACTACA
CGAAGGCATCTGAGGTAGCTGATTTAGATTGGGAGAACCTTGGTTTTGGAATCGTGCAGACCGA
CTACATGTATATCACAAAATGCGGACAGGACGGGAATTTTTCTGAGGGTGAAATGATTCCATTT
GGACCTATAGCGCTGAACCCATCTTCTGGAGTCCTTAATTACGGACAGGGATTATTTGAAGGTC
TAAAAGCATATAGAACAACAGATGACTCTATCTTATTATTTCGCCCGGAGGAAAATGCACTGAG
AATGAGAACAGGTGCAGAAAGAATGTGCATGCCTGCGCCTAGTGTTGAGCAGTTTGTGGATGCA
GTAAAGCAAACTGTTTTAGCAAACAAGAGATGGGTGCCTCCTACCGGTAAAGGTTCTTTGTATA
TTAGACCGCTACTCATGGGTAGTGGTGCTGTTCTTGGTCTTGCACCTGCTCCTGAGTATACGTT
CATTATATTTGTCTCGCCTGTGGGGAACTACTTTAAGGAAGGTTTAGCTCCAATAAATTTGATA
GTTGAAGATAAGTTTCATCGTGCAACCCCTGGTGGAACTGGAAGTGTGAAGACCATAGGAAATT
ATGCCTCGGTCTTGATGGCACAGAAGATTGCAAAAGAAAAGGGCTATTCTGATGTTCTCTACTT
GGATGCTGTTCACAAAAAGTATCTTGAAGAAGTTTCTTCATGTAATATTTTTGTTGTCAAGGGC
AATGTCATTTCAACTCCAGCAGTAAAAGGAACAATATTGCCAGGCATCACAAGGAAAAGTATCA
TTGATGTTGCTCTGAGCAAGGGTTTCCAGGTCGAGGAGCGACTTGTGTCAGTAGATGAGCTGCT
TGAAGCTGATGAGGTTTTCTGCACAGGAACTGCTGTCGTAGTGTCTCCTGTGGGTAGTATTACC
TATCAAGGGAAAAG
						
					

						Genomic sequence
						
							CCACTGCCATTTGAGGCCCACACAGCGTTGGCCCCACCAGTCGGTCTCACATCGGCTACAATGG
CTAGAAGGTTCTGTGAGTAAAGCCGCTTCCCCATTTGGCCCCCGTGCCATTCCCGTCCGATTTG
GCCATCGTCGTCTCCGTCTCCGCTGCGTCTCCGCTGCCTCTCCCGCGCCGCCGCCGTCGCAGTA
GCCGCAGAAACCCTAGACCCCGGCGAGAGAGCGGGGGAGCTCACGGGAGAGCAGCAAATGGAGT
ACGGTGCAGCAACGCGTGGCGCGCTCCTCGCGGCCGCCCCGCTCTCCGGCGCCCGGCGTAGCTG
GTTGCCCCTCTCATCGCCGCCGTCGCCGCCCTCTATTCAGGTACGCGCGTGACTAGGCCGGTAT
TTTGGTTTGCACGGTCTCCTGGATGCGTTTGTGCTGTAGATTTCGTGGATCATGGTGGCTAGAT
TGGCATGTACGGTCGAACTGGAGATTTAGGATTTGGATTATGTTGTTGTAGGTGGGGTTTGAGA
AGTATTTGTGGAGATTAAATTGATGAAGTCCATGCTGTTTTTTTTATGTTCGTTTGGTATTAAA
ATACTATATTTGATACTGGTGTTTTCTCGCTGGTGCAGATTCAGAATCGACTTTATTCGATATC
GTCGCTTCCACTAAAGGCTCGAGGCGTGAGAAGATGCGAGGCTTCTCTAGCAAGTGACTACACG
TGTGTGATTCTTACCATAAACTGCATGATTCGTTGAACCCTCCCCCTCCAGGCAGGGGGACCTG
CTTTTCAAATTCGACGATGTGTTGGTCATTTCTTTCAGGAATAATTCTGATGGCAACTCTTGCA
TATTTTCAGGAAGGCATCTGAGGTAGCTGATTTAGATTGGGAGAACCTTGGTTTTGGAATCGTG
CAGACCGACTACATGTATATCACAAAATGCGGACAGGACGGGAATTTTTCTGAGGGTGAAATGA
TTCCATTTGGACCTATAGCGCTGAACCCATCTTCTGGAGTCCTTAATTACGGACAGGTTTGTAT
TGGAGGTAGATCTCCTTGCTTCATATATCCTGAGTACATTGTGGTAACTGAAGATAAGGAAAAT
TGAGCATTTTTAAATACTTTTTGTCCTAAAAGATTATGATTATTTGTAGGGATTATTTGAAGGT
CTAAAAGCATATAGAACAACAGATGACTCTATCTTATTATTTCGCCCGGAGGAAAATGCACTGA
GAATGAGAACAGGTGCAGAAAGAATGTGCATGCCTGCGCCTAGTGTTGAGCAGTTTGTGGATGC
AGTAAAGCAAACTGTTTTAGCAAACAAGAGATGGGTGGGTTTACTGTAAAAAATAAATCATTTC
ATAGTGGGCTAGGCCGCTGTTCATACTCTTCATTTAATCATTTGTTAAATAATTTTTAATTCCA
GGTGCCTCCTACCGGTAAAGGTTCTTTGTATATTAGACCGCTACTCATGGGTAGTGGTGCTGTT
CTTGGTCTTGCACCTGCTCCTGAGTATACGTTCATTATATTTGTCTCGCCTGTGGGGAACTACT
TTAAGGTTTGTGTTTTTTCTTTAATTCTGCTCCCTCTATTAGCCGCAGCGTTGTTGCCATAAAT
AAAGAAAAGCTATGGTAGATACTGTTATAATCTGCATTCTACTTGACACTGTGTTTCTGAATAT
ATATCTTGCAGCAACTTGACCTATGAATTTATGATTTTTTTTCCACTTTTGTTGGTTGAGATAA
CTGATGGTTGAATGTAGAATTTCTAAACAGCTCGTGTATCATTGATTTTTTTTTTTAATTTAAT
TTGTTCACTCATATCTTCAGGAAGGTTTAGCTCCAATAAATTTGATAGTTGAAGATAAGTTTCA
TCGTGCAACCCCTGGTGGAACTGGAAGTGTGAAGACCATAGGAAATTATGCCTCGGTAATTCTA
CAGTCAAGTTTGAAACCCATTACTTACAGCTTTGATGCGGAAGTTATTGTCATGGCTATTTCTG
CAACTTCGCTACCTGATATTTCTATTTCTGATGTTTTTGATGTAATATTTTTAGTTCAAATCTG
CAAATCTTAAACTACAGAACAGTCATTCTATTAATGTGAACATGTGATTGAAAGGAGTACTTTG
TCAGTGCAATTATCTTAAGAACATACAGCCATTATGAATGAAGCTGTGAAATGAAAAATAATTG
AACCATCAGATATATTTCAAATGGAATGCTATTTTATATGACGACTTATATCTCCTTGCTATCT
TATCATTATTATTTTCTGCTATCTTGTATGTCGAATTCTGTTATTATTTTCACTGGCTTTAATT
CATATACTGTCTTTGCATAGGTCTTGATGGCACAGAAGATTGCAAAAGAAAAGGGCTATTCTGA
TGTTCTCTACTTGGATGCTGTTCACAAAAAGTATCTTGAAGAAGTTTCTTCATGTAATATTTTT
GTTGTCAAGGTGTGTTTATGCTGTCAATAATACTTGTTAGTTTGATTTGAGCACTTTCTCCTGT
AGGTCCAGCTAATGCCTTTTTAGTTCTGAAAGCTACCACAGTAAATTAACCAATGCTAAGATTT
GTAACCTACTATATTAACGATCAGCTTTGTTTTCTTTACTGACAGATGATGTCCTTTTTATATC
TGTATAGATTAAAGAAGTTTCAAATAAATGAAATGAGTCATACGCTCTTTGAAGTAGATATTTG
ATACTCTTGGATTGAACAGGCTTCTGGCTCAAAACTTTTGAAAATCTGTAACAGATAGCATGAT
AGTATCCAAAAAATATAGATGTGTTTTATGTGTTAGTTGCTAGCAACATCCATTAGTAAATGCA
TACCCTGTGGGTTAGTATATTCCTATAAATGATGGAGATAATGTGTCAAGGGATCTAATTTCAT
AACATTCAAACTCAAAACTGTTACCCTCTACCATGCATAAGCCTCTGTGAATTGTTACCTAAAT
GAAAACAACAGGCATATCCACAACACATGGTCATAGATATTGGTTCGCTAGCAATACGGTGCCA
TGACTATTCTATAGGAATAGGATAATACCGTACTAACAATTGGTTGTTCTATACCTACTAGGTT
CAGCCAGGTTGTCTGTGTCATATCCTGAATGACAAACTATTGTTGTATTTGTTTTAGTTCACAG
TGGACTTTGTATTTCCATTGCAGACAAAACATTTATTTCTTATTTTTGCGTAAGGATAGTCAGC
AAATTGAAGGAATATCTTATACATGCTGCCTTTAACTGAGATCTCTTTATTATTTTTCTTGGCT
TTTGCACCAGGGCAATGTCATTTCAACTCCAGCAGTAAAAGGAACAATATTGCCAGGCATCACA
AGGAAAAGTATCATTGATGTTGCTCTGAGCAAGGGTTTCCAGGTAAATTAATCATCAATCCCAT
GAACTAACAAGCAAGATGTTTTACTATCAGTGTAGCTCAAATTAGTAGCCTGTGATTTGATAGC
TTTGACAACAGCATTAGGTATTCAACATTGATCCTTTCGTATTTGCTTGGTATCCAAGTCCATG
TTTCTATTTGTCCATATCATCCTTCATGTTCGTTGTGAGGGTTATCTATCTTTCAATCTACCAA
GATTCATGATTAGGTTCTTATGAGCTACGGCTACATAGAAGAAGATGGAACCTATTTTTCCTAG
CGATGTTGATCCAATTAGAAGCAGCAAAACACTGTTCTCAATCTGTTACTGAAAATTGTTACAT
CTATTCTCAGTTTTTTGGGAAATCTTCTATTAATGTATTTGGTTTCTTGAAGGTCGAGGAGCGA
CTTGTGTCAGTAGATGAGCTGCTTGAAGCTGATGAGGTTTTCTGCACAGGAACTGCTGTCGTAG
TGTCTCCTGTGGGTAGTATTACCTATCAAGGGAAAAG
						
					

			
		

Sequences
Splice junction sequence	TTGTGTCAGTAGATGAGCTGCTTGAAGCTGATGAGGTTTTCTGCACAGGAACTGCTGTCGTAGT GTCTCCTGTGGGTAGTATTACCTATCAAGGGAAAAGccactgccatttgaggcccacacagcgt tggccccaccagtcggtctcacatcggctacaatggctagaaggttctgtgagtaaagccgctt ccccattt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1358 Transcript exons: 27779978-27780337,27780592-27780680,27780819-27780993,27 781115-27781291,27781387-27781518,27781790-27781888,2778 2302-27782418,27783252-27783347,27783742-27783854 CCACTGCCATTTGAGGCCCACACAGCGTTGGCCCCACCAGTCGGTCTCACATCGGCTACAATGG CTAGAAGGTTCTGTGAGTAAAGCCGCTTCCCCATTTGGCCCCCGTGCCATTCCCGTCCGATTTG GCCATCGTCGTCTCCGTCTCCGCTGCGTCTCCGCTGCCTCTCCCGCGCCGCCGCCGTCGCAGTA GCCGCAGAAACCCTAGACCCCGGCGAGAGAGCGGGGGAGCTCACGGGAGAGCAGCAAATGGAGT ACGGTGCAGCAACGCGTGGCGCGCTCCTCGCGGCCGCCCCGCTCTCCGGCGCCCGGCGTAGCTG GTTGCCCCTCTCATCGCCGCCGTCGCCGCCCTCTATTCAGATTCAGAATCGACTTTATTCGATA TCGTCGCTTCCACTAAAGGCTCGAGGCGTGAGAAGATGCGAGGCTTCTCTAGCAAGTGACTACA CGAAGGCATCTGAGGTAGCTGATTTAGATTGGGAGAACCTTGGTTTTGGAATCGTGCAGACCGA CTACATGTATATCACAAAATGCGGACAGGACGGGAATTTTTCTGAGGGTGAAATGATTCCATTT GGACCTATAGCGCTGAACCCATCTTCTGGAGTCCTTAATTACGGACAGGGATTATTTGAAGGTC TAAAAGCATATAGAACAACAGATGACTCTATCTTATTATTTCGCCCGGAGGAAAATGCACTGAG AATGAGAACAGGTGCAGAAAGAATGTGCATGCCTGCGCCTAGTGTTGAGCAGTTTGTGGATGCA GTAAAGCAAACTGTTTTAGCAAACAAGAGATGGGTGCCTCCTACCGGTAAAGGTTCTTTGTATA TTAGACCGCTACTCATGGGTAGTGGTGCTGTTCTTGGTCTTGCACCTGCTCCTGAGTATACGTT CATTATATTTGTCTCGCCTGTGGGGAACTACTTTAAGGAAGGTTTAGCTCCAATAAATTTGATA GTTGAAGATAAGTTTCATCGTGCAACCCCTGGTGGAACTGGAAGTGTGAAGACCATAGGAAATT ATGCCTCGGTCTTGATGGCACAGAAGATTGCAAAAGAAAAGGGCTATTCTGATGTTCTCTACTT GGATGCTGTTCACAAAAAGTATCTTGAAGAAGTTTCTTCATGTAATATTTTTGTTGTCAAGGGC AATGTCATTTCAACTCCAGCAGTAAAAGGAACAATATTGCCAGGCATCACAAGGAAAAGTATCA TTGATGTTGCTCTGAGCAAGGGTTTCCAGGTCGAGGAGCGACTTGTGTCAGTAGATGAGCTGCT TGAAGCTGATGAGGTTTTCTGCACAGGAACTGCTGTCGTAGTGTCTCCTGTGGGTAGTATTACC TATCAAGGGAAAAG
Genomic sequence	CCACTGCCATTTGAGGCCCACACAGCGTTGGCCCCACCAGTCGGTCTCACATCGGCTACAATGG CTAGAAGGTTCTGTGAGTAAAGCCGCTTCCCCATTTGGCCCCCGTGCCATTCCCGTCCGATTTG GCCATCGTCGTCTCCGTCTCCGCTGCGTCTCCGCTGCCTCTCCCGCGCCGCCGCCGTCGCAGTA GCCGCAGAAACCCTAGACCCCGGCGAGAGAGCGGGGGAGCTCACGGGAGAGCAGCAAATGGAGT ACGGTGCAGCAACGCGTGGCGCGCTCCTCGCGGCCGCCCCGCTCTCCGGCGCCCGGCGTAGCTG GTTGCCCCTCTCATCGCCGCCGTCGCCGCCCTCTATTCAGGTACGCGCGTGACTAGGCCGGTAT TTTGGTTTGCACGGTCTCCTGGATGCGTTTGTGCTGTAGATTTCGTGGATCATGGTGGCTAGAT TGGCATGTACGGTCGAACTGGAGATTTAGGATTTGGATTATGTTGTTGTAGGTGGGGTTTGAGA AGTATTTGTGGAGATTAAATTGATGAAGTCCATGCTGTTTTTTTTATGTTCGTTTGGTATTAAA ATACTATATTTGATACTGGTGTTTTCTCGCTGGTGCAGATTCAGAATCGACTTTATTCGATATC GTCGCTTCCACTAAAGGCTCGAGGCGTGAGAAGATGCGAGGCTTCTCTAGCAAGTGACTACACG TGTGTGATTCTTACCATAAACTGCATGATTCGTTGAACCCTCCCCCTCCAGGCAGGGGGACCTG CTTTTCAAATTCGACGATGTGTTGGTCATTTCTTTCAGGAATAATTCTGATGGCAACTCTTGCA TATTTTCAGGAAGGCATCTGAGGTAGCTGATTTAGATTGGGAGAACCTTGGTTTTGGAATCGTG CAGACCGACTACATGTATATCACAAAATGCGGACAGGACGGGAATTTTTCTGAGGGTGAAATGA TTCCATTTGGACCTATAGCGCTGAACCCATCTTCTGGAGTCCTTAATTACGGACAGGTTTGTAT TGGAGGTAGATCTCCTTGCTTCATATATCCTGAGTACATTGTGGTAACTGAAGATAAGGAAAAT TGAGCATTTTTAAATACTTTTTGTCCTAAAAGATTATGATTATTTGTAGGGATTATTTGAAGGT CTAAAAGCATATAGAACAACAGATGACTCTATCTTATTATTTCGCCCGGAGGAAAATGCACTGA GAATGAGAACAGGTGCAGAAAGAATGTGCATGCCTGCGCCTAGTGTTGAGCAGTTTGTGGATGC AGTAAAGCAAACTGTTTTAGCAAACAAGAGATGGGTGGGTTTACTGTAAAAAATAAATCATTTC ATAGTGGGCTAGGCCGCTGTTCATACTCTTCATTTAATCATTTGTTAAATAATTTTTAATTCCA GGTGCCTCCTACCGGTAAAGGTTCTTTGTATATTAGACCGCTACTCATGGGTAGTGGTGCTGTT CTTGGTCTTGCACCTGCTCCTGAGTATACGTTCATTATATTTGTCTCGCCTGTGGGGAACTACT TTAAGGTTTGTGTTTTTTCTTTAATTCTGCTCCCTCTATTAGCCGCAGCGTTGTTGCCATAAAT AAAGAAAAGCTATGGTAGATACTGTTATAATCTGCATTCTACTTGACACTGTGTTTCTGAATAT ATATCTTGCAGCAACTTGACCTATGAATTTATGATTTTTTTTCCACTTTTGTTGGTTGAGATAA CTGATGGTTGAATGTAGAATTTCTAAACAGCTCGTGTATCATTGATTTTTTTTTTTAATTTAAT TTGTTCACTCATATCTTCAGGAAGGTTTAGCTCCAATAAATTTGATAGTTGAAGATAAGTTTCA TCGTGCAACCCCTGGTGGAACTGGAAGTGTGAAGACCATAGGAAATTATGCCTCGGTAATTCTA CAGTCAAGTTTGAAACCCATTACTTACAGCTTTGATGCGGAAGTTATTGTCATGGCTATTTCTG CAACTTCGCTACCTGATATTTCTATTTCTGATGTTTTTGATGTAATATTTTTAGTTCAAATCTG CAAATCTTAAACTACAGAACAGTCATTCTATTAATGTGAACATGTGATTGAAAGGAGTACTTTG TCAGTGCAATTATCTTAAGAACATACAGCCATTATGAATGAAGCTGTGAAATGAAAAATAATTG AACCATCAGATATATTTCAAATGGAATGCTATTTTATATGACGACTTATATCTCCTTGCTATCT TATCATTATTATTTTCTGCTATCTTGTATGTCGAATTCTGTTATTATTTTCACTGGCTTTAATT CATATACTGTCTTTGCATAGGTCTTGATGGCACAGAAGATTGCAAAAGAAAAGGGCTATTCTGA TGTTCTCTACTTGGATGCTGTTCACAAAAAGTATCTTGAAGAAGTTTCTTCATGTAATATTTTT GTTGTCAAGGTGTGTTTATGCTGTCAATAATACTTGTTAGTTTGATTTGAGCACTTTCTCCTGT AGGTCCAGCTAATGCCTTTTTAGTTCTGAAAGCTACCACAGTAAATTAACCAATGCTAAGATTT GTAACCTACTATATTAACGATCAGCTTTGTTTTCTTTACTGACAGATGATGTCCTTTTTATATC TGTATAGATTAAAGAAGTTTCAAATAAATGAAATGAGTCATACGCTCTTTGAAGTAGATATTTG ATACTCTTGGATTGAACAGGCTTCTGGCTCAAAACTTTTGAAAATCTGTAACAGATAGCATGAT AGTATCCAAAAAATATAGATGTGTTTTATGTGTTAGTTGCTAGCAACATCCATTAGTAAATGCA TACCCTGTGGGTTAGTATATTCCTATAAATGATGGAGATAATGTGTCAAGGGATCTAATTTCAT AACATTCAAACTCAAAACTGTTACCCTCTACCATGCATAAGCCTCTGTGAATTGTTACCTAAAT GAAAACAACAGGCATATCCACAACACATGGTCATAGATATTGGTTCGCTAGCAATACGGTGCCA TGACTATTCTATAGGAATAGGATAATACCGTACTAACAATTGGTTGTTCTATACCTACTAGGTT CAGCCAGGTTGTCTGTGTCATATCCTGAATGACAAACTATTGTTGTATTTGTTTTAGTTCACAG TGGACTTTGTATTTCCATTGCAGACAAAACATTTATTTCTTATTTTTGCGTAAGGATAGTCAGC AAATTGAAGGAATATCTTATACATGCTGCCTTTAACTGAGATCTCTTTATTATTTTTCTTGGCT TTTGCACCAGGGCAATGTCATTTCAACTCCAGCAGTAAAAGGAACAATATTGCCAGGCATCACA AGGAAAAGTATCATTGATGTTGCTCTGAGCAAGGGTTTCCAGGTAAATTAATCATCAATCCCAT GAACTAACAAGCAAGATGTTTTACTATCAGTGTAGCTCAAATTAGTAGCCTGTGATTTGATAGC TTTGACAACAGCATTAGGTATTCAACATTGATCCTTTCGTATTTGCTTGGTATCCAAGTCCATG TTTCTATTTGTCCATATCATCCTTCATGTTCGTTGTGAGGGTTATCTATCTTTCAATCTACCAA GATTCATGATTAGGTTCTTATGAGCTACGGCTACATAGAAGAAGATGGAACCTATTTTTCCTAG CGATGTTGATCCAATTAGAAGCAGCAAAACACTGTTCTCAATCTGTTACTGAAAATTGTTACAT CTATTCTCAGTTTTTTGGGAAATCTTCTATTAATGTATTTGGTTTCTTGAAGGTCGAGGAGCGA CTTGTGTCAGTAGATGAGCTGCTTGAAGCTGATGAGGTTTTCTGCACAGGAACTGCTGTCGTAG TGTCTCCTGTGGGTAGTATTACCTATCAAGGGAAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.352106513

Conservation Information
Conserved circRNAs	NA
PMCS	0.352106513

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27780228-27780167(+)
27780077-27783838(-)
27779989-27783762(-)
27780093-27783845(-)
						
						Potential amino acid sequence
						
							MEYGAATRGALLAAAPLSGARRSWLPLSSPPSPPSIQIQNRLYSISSLPLKARGVRRCEASLAS
DYTKASEVADLDWENLGFGIVQTDYMYITKCGQDGNFSEGEMIPFGPIALNPSSGVLNYGQGLF
EGLKAYRTTDDSILLFRPEENALRMRTGAERMCMPAPSVEQFVDAVKQTVLANKRWVPPTGKGS
LYIRPLLMGSGAVLGLAPAPEYTFIIFVSPVGNYFKEGLAPINLIVEDKFHRATPGGTGSVKTI
GNYASVLMAQKIAKEKGYSDVLYLDAVHKKYLEEVSSCNIFVVKGNVISTPAVKGTILPGITRK
SIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVSPVGSITYQGKSHCHLRPTQRWPHQS
VSHRLQWLEGSVSKAASPFGPRAIPVRFGHRRLRLRCVSAASPAPPPSQ*(+)
MGKRLYSQNLLAIVADVRPTGGANAVWASNGSGFSLDR*(-)
MAVAFPLIGNTTHRRHYDSSSCAENLISFKQLIY*(-)
MARGPNGEAALLTEPSSHCSRCETDWWGQRCVGLKWQWLFP*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27780228-27780167(+) 27780077-27783838(-) 27779989-27783762(-) 27780093-27783845(-)
Potential amino acid sequence	MEYGAATRGALLAAAPLSGARRSWLPLSSPPSPPSIQIQNRLYSISSLPLKARGVRRCEASLAS DYTKASEVADLDWENLGFGIVQTDYMYITKCGQDGNFSEGEMIPFGPIALNPSSGVLNYGQGLF EGLKAYRTTDDSILLFRPEENALRMRTGAERMCMPAPSVEQFVDAVKQTVLANKRWVPPTGKGS LYIRPLLMGSGAVLGLAPAPEYTFIIFVSPVGNYFKEGLAPINLIVEDKFHRATPGGTGSVKTI GNYASVLMAQKIAKEKGYSDVLYLDAVHKKYLEEVSSCNIFVVKGNVISTPAVKGTILPGITRK SIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVSPVGSITYQGKSHCHLRPTQRWPHQS VSHRLQWLEGSVSKAASPFGPRAIPVRFGHRRLRLRCVSAASPAPPPSQ(+) MGKRLYSQNLLAIVADVRPTGGANAVWASNGSGFSLDR(-) MAVAFPLIGNTTHRRHYDSSSCAENLISFKQLIY(-) MARGPNGEAALLTEPSSHCSRCETDWWGQRCVGLKWQWLFP(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0558400_circ_g.1

Address

Any questions?

Supported by