Detail information of BGIOSGA013823_circ_g.1


General Information
CircRNA Name BGIOSGA013823_circ_g.1
ID in PlantcircBase osi_circ_005202
Alias 3:38680225|38681164
Organism Oryza sativa ssp. indica
Position chr3: 38680225-38681164  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013823
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA013823-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTATGGTAATACTGAGGCAGCATATGCATCAACATATGGAAGTTCTGAGGCAGCATATGCAGCA
GCATATGGAAATTCTGATGCTTATAGCACTAATCAGggctgcggttgaatttgaaaagaaggca
catgctgataaccttgaacaaagtaaagcaatggagaaaaatatgattgctgtagccagtgaga
ttgagaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTGCGGTTGAATTTGAAAAGAAGGCACATGCTGATAACCTTGAACAAAGTAAAGCAATGGAG
AAAAATATGATTGCTGTAGCCAGTGAGATTGAGAAGCTAAGAGGAGATCTTGCAAATGCTGAAA
AGCGGGCCACTGCTGTCACCGCAACAGCACCTGTAGCTAATCCTGGTATTGCACTGGATCTCAG
GAGTCTATTGTCACTTCCCTTTTCTGTGTAATCGGGGTGGGTAGCCTTAAATTATTATATTCCC
AGTTTTTTGCATAGCCTTTTTTAATAGATTACAATTACTGAACCCAATGGCAAATGTGAAAGTT
TCGTTCATAAAATTGCTAGTTAGGGAGACATCATGGGATTGCAGCATTTGCTTTTAGTAGTCAA
TTAGTCAATTTGCAGTTGATGCCCTCCATTCTGAAATATAGGTACTTAGTTACTTGTGGGAATC
TATACCCAGTCCAATTAGACAATTTCCTGCCATGGCTAACAAAGCTCCTTTCAACCATATAGAA
ACCTGTAAAGGCATTGGTATTTGGTAAGAGTGTTAACTTGCAAGGGTGATTGGTTGGGAGAGGT
TTAGAAGCATAGCATAAAAGCCACTATCCATGTCTCTTAGCTTCTTTCAATAGGTAGGCTTGAA
CTTCTCAAAAAGTTGTATGGAGATATTTGGCTGGACACTATTGAATTGTCACTCTGAATTGCAT
TGATTTGATTGTATCATTATTTTGAATTGGTCCTTTCATATCCTATTTCAGGGTTCCCTACAAC
GTATGGCAATTCTGAGGCAACATATCCAGCACCTGCAGCATATGGTAACTCTGAGACAACATAT
GCACCAACGTATGGTAATACTGAGGCAGCATATGCATCAACATATGGAAGTTCTGAGGCAGCAT
ATGCAGCAGCATATGGAAATTCTGATGCTTATAGCACTAATCAG
Conservation Information
Conserved circRNAs osa_circ_022459*
PMCS
Functional Information
Coding potential Y
Potential coding position 38680284-38680233(+)
38680996-38680233(+)
Potential amino acid sequence MEKNMIAVASEIEKLRGDLANAEKRATAVTATAPVANPGFPTTYGNSEATYPAPAAYGNSETTY
APTYGNTEAAYASTYGSSEAAYAAAYGNSDAYSTNQGCG*(+)
MAILRQHIQHLQHMVTLRQHMHQRMVILRQHMHQHMEVLRQHMQQHMEILMLIALIRAAVEFEK
KAHADNLEQSKAMEKNMIAVASEIEKLRGDLANAEKRATAVTATAPVANPGFPTTYGNSEATYP
APAAYGNSETTYAPTYGNTEAAYASTYGSSEAAYAAAYGNSDAYSTNQGCG*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021