Detail information of BGIOSGA012521_circ_g.1


General Information
CircRNA Name BGIOSGA012521_circ_g.1
ID in PlantcircBase osi_circ_012935
Alias Chr03:11870617_11872512(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 12943578-12945473  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA012521
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA012521-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGCTCTTGAACAACAGCTCTGAGATGCAGTTAGATCCTACTGGTGCTTGTCATCATGCATCA
ATAGTTTTATTTTCATTATTCATGATTGTGTTCTCAggtgaggattgaatcttactgctactaa
gctctgatttggtcatggtttacggcagactaggattgctgttgaactgatttcacactgctaa
gacacatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAGGATTGAATCTTACTGCTACTAAGCTCTGATTTGGTCATGGTTTACGGCAGACTAGGAT
TGCTGTTGAACTGATTTCACACTGCTAAGACACATCTAAGCTGGAACAAGTAGATGAAACGAAT
AGGCAGCAGCATTAGTATAGTAGCCATCAAGCAAGTTTCAAAGTGGTAAGAAACTACGAGCTCT
TCCAAGTATGTGAAATCATGGACCATAGAGTGCTTGTGAGTAGGTTATCAAACTGGTGGTGTGA
CATTCCATTTGTTCAGACATGCGAGCCCTGAGGTAGTAGGTCGATGGGTCTTATCAGCTTAGTA
AGCTGTTGTTGCAATTAAATTGGTTTAGGGAACTCTACACGAGTAACGAGGAAATTGCCTATTG
TCTATGCAAGTTTGAGCAACAGTCATCAACTTGGCATGGTTTTGCTGGTTCTCACTAGGGTTAT
TGTAAGGATGTTGTTGTGCGTTTGATTATCCTGGATTAAACTTAGACTAGAGAGTTGAAGTTAT
ATCTACCACCAAGGGCGTTGGTTCAAATGACTTGCTGCATATCCGCAACCAACAAATGCTGTAG
TGGGACATATGTGGCTCTGTAAATATTGGATCGTCTGCACAAGCCTCAAACCTCTGGTCCACTT
TAGTTAGCTATGACACCATCCTAGCTTCCTTGATTGTTCCTAGTGCTTTTACTTAGTGCTGCCT
GCTTAATGTGTAAAATATCGGTATTGGTAACATTCGTCTCATGGAACTTCCTAATTCAAAATAT
AACTGCTCGTACAATGTGGGATAACAGATCCATGTATGCCTTGTACTGTTACACAACCTTTCAA
TGTGAAAGCAAAAGAAATTTAGTGGTACTGTCGAACTTTAGATGAAAAGGTTGTGATACTCTTG
TCTTGTTGGATCATTTCTCTAAGTTCTAAAGCTAAACTCCTTTTTTTACTTACTGCCTAATTGC
CTATTTATTGCTCTACTGATTTGATGAGCTTTAAGTTTTCTTTTGTGCACCAGACAGATGCTTA
AATGTGTTGCCTAATATTAGAGAATAACTAGACCATTTGTTTGAAACAGCTGGCTCGATACACT
ACCATATTTAGCATTTGTTGTATTTCACTCTACCATTTTTCCTATGCTCCCTTACACCTATTTT
GATGTACTATTTCTTTGTTTATTTCTCCTCTGATTTCTTGTAAAAAAAATATTTTTTATGCTTG
GATGCTTGTAGCCTTGTCTCCACCAGACCACCTTACTATTCCTTAAGTTACATATTTTCTTGCT
GTCTCATTGATCCCAATTTATCATGTGTGGTCTTTCCTTGTTTAGTCCATGTTTGTCTAGCAAA
TGGTATATTCTAGTTGGCACATTATCTGCAACTGTTGTTTAGTAGTGAACTGTTTGTCCTGCAG
CCTGCAATTAGGAGTAGATAGTCTGCTATTTCAACAGACAACAAGCATATTCCTATTTGTTGAT
GCTGTCTAGACTCTAGAGCTCATACTGTAGTTTTCTAGTTGGGTATCCACTATCCCCATGTACT
GCCAAAGAATTAGGTATATGTACCTGAAAGTCTGGACCCTTTGTACAAATATTCCACAAGTGCC
ATGTTGTGGATTAGAGTCATAAACGCACTGGTACTTGCGCAATATACTGCAACAACTGTCAATG
CTGTGCTTACATACTTCTCAATTTCCACGTCCACATGAGGTTTAAAATGAGATCTCCTAATATA
TTACATCGTGCATAAAAGAAATGCTTGTATTTTGTCAGAAGCATAGCTCTATCTGATGCTTATT
ATAATTTGCTCTTGAACAACAGCTCTGAGATGCAGTTAGATCCTACTGGTGCTTGTCATCATGC
ATCAATAGTTTTATTTTCATTATTCATGATTGTGTTCTCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021