Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d004877_circ_g.4 |
ID in PlantcircBase | zma_circ_007280 |
Alias | Zm02circ00082, zma_circ_0000831, GRMZM2G122038_C1 |
Organism | Zea mays |
Position | chr2: 145971501-145973728 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d004877 |
Parent gene annotation |
Coatomer subunit beta'-3 |
Parent gene strand | - |
Alternative splicing | Zm00001d004877_circ_g.1 Zm00001d004877_circ_g.2 Zm00001d004877_circ_g.3 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d004877_T001:5 Zm00001d004877_T002:5 Zm00001d004877_T003:5 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.052014854 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
145973123-145971503(-) |
Potential amino acid sequence |
MDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLNPSISSSTDNDMLRRVEEL GGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDLDMCWILASHRAGYVSIWN YNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFATGDGYGYICIYAYTMDKV KKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTRTFDAHTSGVQHVRFNPAD VNTFVSVSCGGACVKASTCVSELLEQVQSLGVSTVPSSQLHRITSIPKGFGETNTHHIRSPGST SESSKLLDVYPLELRFPLEPNKCTECPVTLTNRTDCYVGVWITPAKPHTCHGFYFSYLWWQFPS SSFFQIMDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLNPSISSSTDNDML RRVEELGGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDLDMCWILASHRAG YVSIWNYNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFATGDGYGYICIYA YTMDKVKKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTRTFDAHTSGVQHV RFNPADVNTFVSVSCGGACVKASTCVSELLEQVQSLGVSTVPSSQLHRITSIPKGFGETNTHHI RSPGSTSESSKLLDVYPLELRFPLEPNKCTECPVTLTNRTDCYVGVWITPAKPHTCHGFYFSYL WWQFPSSSFFQIMDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLNPSISSS TDNDMLRRVEELGGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDLDMCWIL ASHRAGYVSIWNYNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFATGDGYG YICIYAYTMDKVKKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTRTFDAHT SGVQHVRFNPADVNTFVSVSCGGACVKASTCVSELLEQVQSLGVSTVPSSQLHRITSIPKGFGE TNTHHIRSPGSTSESSKLLDVYPLELRFPLEPNKCTECPVTLTNRTDCYVGVWITPAKPHTCHG FYFSYLWWQFPSSSFFQIMDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLN PSISSSTDNDMLRRVEELGGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDL DMCWILASHRAGYVSIWNYNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFA TGDGYGYICIYAYTMDKVKKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTR TFDAHTSGVQHVRFNPADVNTFVSVSCGGACVK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |