Detail information of Zm00001d004877_circ_g.4


General Information
CircRNA Name Zm00001d004877_circ_g.4
ID in PlantcircBase zma_circ_007280
Alias Zm02circ00082, zma_circ_0000831, GRMZM2G122038_C1
Organism Zea mays
Position chr2: 145971501-145973728  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d004877
Parent gene annotation Coatomer subunit beta'-3
Parent gene strand -
Alternative splicing Zm00001d004877_circ_g.1 Zm00001d004877_circ_g.2 Zm00001d004877_circ_g.3
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d004877_T001:5
Zm00001d004877_T002:5
Zm00001d004877_T003:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTGGGTATACTGGTTATTCGATGCAGCTGGGATGATGGCACTGTAGAAACACCCAGCGACTG
CACCTGCTCCAGCAACTCGGAGACACATGTACTTGCctttacacaggcgccaccacaggaaaca
ctaacaaaagtgttgacatcagctgggttgaacctgacatgctgcactccgctcgtgtgagcgt
cgaatgtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1170
Transcript exons: 145971501-145971917,145972166-145972220,145972535-145972
596,145972843-145973352,145973603-145973728
CTTTACACAGGCGCCACCACAGGAAACACTAACAAAAGTGTTGACATCAGCTGGGTTGAACCTG
ACATGCTGCACTCCGCTCGTGTGAGCGTCGAATGTTCGAGTGCACGCCCATTGCTGGTCCCAGG
CCCAAAGCTTGATTGAGCGGTCACAAGACGACGACGAAAGCAAGAACGGGTAGGTTGAGTGAAC
AGCCAACAAGCTGACAGGTTTGCCATGATAAGCTTCAAATTTCTTCACTTTGTCCATTGTGTAT
GCATAGATGCAGATATACCCATAGCCGTCCCCTGTTGCGAACAATTTCTTTCTAGTGATAAATT
TGGCCGAATAAACACACGATGTGGTGGCACTACGAGTACGTGTGAGCGAGTGTAGCATGCCTGC
TTCCTTGGTGACCTTCAATGCAGTCACCCTTCCCTGTGTGTTGTAGTTCCAAATGGAAACATAA
CCTGCGCGATGACTAGCCAGGATCCAACACATATCGAGGTCCACGTCGATGGATAAGACATTCT
CTAAAGTTTTTGCTGAAATGACCATTGGAACACTGTGGACCACTTCTGGCTTGCAGCTTGCTGG
ATCACAGCTGACAGCCCTCAGGATTGCCCGGTGGACCTCGCCCCCCAACTCCTCGACTCGCCTC
AACATATCATTGTCCGTGCTGCTACTAATCGACGGGTTCAAATTTTCGAGATCCTTCTGTGATT
CCATGACAATCATCAACACCTGAAATTTGTCCTCAGTGTCTTGCAGTCCCAGTCCCAGCTGCAG
CGGGTCCATTACCAAGGTTACGACCAATGTGGAATGCGGGTCCATGATCTGGAAAAAGGATGAG
CTTGGAAACTGCCACCACAGGTACGAAAAATAAAAGCCATGGCAAGTGTGAGGTTTCGCCGGTG
TAATCCAGACACCAACGTAACAGTCTGTCCTGTTTGTCAGGGTCACTGGGCATTCAGTGCACTT
GTTTGGCTCCAATGGGAACCGGAGCTCCAGTGGGTATACGTCCAGTAGCTTGCTACTCTCAGAG
GTCGACCCAGGGGAGCGTATATGATGAGTGTTTGTTTCGCCAAAGCCTTTGGGTATACTGGTTA
TTCGATGCAGCTGGGATGATGGCACTGTAGAAACACCCAGCGACTGCACCTGCTCCAGCAACTC
GGAGACACATGTACTTGC

Genomic sequence CTTTACACAGGCGCCACCACAGGAAACACTAACAAAAGTGTTGACATCAGCTGGGTTGAACCTG
ACATGCTGCACTCCGCTCGTGTGAGCGTCGAATGTTCGAGTGCACGCCCATTGCTGGTCCCAGG
CCCAAAGCTTGATTGAGCGGTCACAAGACGACGACGAAAGCAAGAACGGGTAGGTTGAGTGAAC
AGCCAACAAGCTGACAGGTTTGCCATGATAAGCTTCAAATTTCTTCACTTTGTCCATTGTGTAT
GCATAGATGCAGATATACCCATAGCCGTCCCCTGTTGCGAACAATTTCTTTCTAGTGATAAATT
TGGCCGAATAAACACACGATGTGGTGGCACTACGAGTACGTGTGAGCGAGTGTAGCATGCCTGC
TTCCTTGGTGACCTTCAATGCAGTCACCCTTCCCTGACAAACAATGAATTAATCAACAAAGTAC
ATTTAACGACCTATAAAGTAAAACATACTCCCTTCATTATTCTAGTTATACTAGGACATTTTAT
TTTATACATATAATTTTATTATATATTTAGATATATAATGTGTCAAGATACACAGTGAAAATAA
TATGGTCTTATGATTTAGAATGGAGGAAATACATGCATACTTCACAGTTCCACGTAAAATTGTA
GATATCAAGACATGTAGTTTTATACCTGTGTGTTGTAGTTCCAAATGGAAACATAACCTGCGCG
ATGACTAGCCAGGATCCTGTGATGTATTAATGTATATAGTGCAGTTAAATAATAAAAAAGGAAA
TCCAGATAAACCATGTGTGCAAGATTAACATCTATATGGTCCAAGATTTCAGTTTATACAAAAA
TTCATGAACTATGTCTGGAGCATAAAATTAGTTTCATTTAATTCTTAATGAACTATATCTTCAT
AATAGCTAGTTTATTTAAACTTATAGATGCTAATGTATATTTTTAGGCAAAGTTACATAGTATA
CAACAATTTTGACTTATATATGATAATAACACTAAAGTGATGTATAATTTAGAACAAATGGAGT
ACATACTAACCAACACATATCGAGGTCCACGTCGATGGATAAGACATTCTCTAAAGTTTTTGCT
GAAATGACCTGATAAAACCAAATAATAATCATCCGTCGCGCTCTAAAAGCAAGTGACCACAGTC
AAATTCTATGGTCACTCTGAGTTATGATAACTACTATACATATACATATACATACATATATATG
TAATTTGATTATTTGGATATTAAGAGTTTAGTAGCTTGTATGAATTGATTTATTTTAGAAAGGA
ATTACTAACTTCTTGGTGTGTTCTGTGGACAAGTACTGCAGATGGAAGGGAGCAACACACACCA
TTGGAACACTGTGGACCACTTCTGGCTTGCAGCTTGCTGGATCACAGCTGACAGCCCTCAGGAT
TGCCCGGTGGACCTCGCCCCCCAACTCCTCGACTCGCCTCAACATATCATTGTCCGTGCTGCTA
CTAATCGACGGGTTCAAATTTTCGAGATCCTTCTGTGATTCCATGACAATCATCAACACCTGAA
ATTTGTCCTCAGTGTCTTGCAGTCCCAGTCCCAGCTGCAGCGGGTCCATTACCAAGGTTACGAC
CAATGTGGAATGCGGGTCCATGATCTGGAAAAAGGATGAGCTTGGAAACTGCCACCACAGGTAC
GAAAAATAAAAGCCATGGCAAGTGTGAGGTTTCGCCGGTGTAATCCAGACACCAACGTAACAGT
CTGTCCTGTTTGTCAGGGTCACTGGGCATTCAGTGCACTTGTTTGGCTCCAATGGGAACCGGAG
CTCCAGTGGGTATACGTCCAGTAGCTTGCTACTCTCAGAGGTCGACCCAGGGGAGCGTATCTGT
GATTCCAAAGCAACCAAAACACCATCAGAGGTACACACGCAATATCTGCGACTCCAAAGCAACC
ACAACACCGTTAGAGGTATACACACAATGGTTTGTTGGGATATCCTCGTATTTAATCTATGTAT
TGGAGTGGATTAGGGTATAATCATTTAAACTAATTTATACACCCTAATTCACCTCAACATATGT
TTATTGATGTGAATACAATAGTATCCAAACAAGATCTAAGAATTATTAACTCACATGATGAGTG
TTTGTTTCGCCAAAGCCTTTGGGTATACTGGTTATTCGATGCAGCTGGGATGATGGCACTGTAG
AAACACCCAGCGACTGCACCTGCTCCAGCAACTCGGAGACACATGTACTTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.052014854
Functional Information
Coding potential Y
Potential coding position 145973123-145971503(-)
Potential amino acid sequence MDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLNPSISSSTDNDMLRRVEEL
GGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDLDMCWILASHRAGYVSIWN
YNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFATGDGYGYICIYAYTMDKV
KKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTRTFDAHTSGVQHVRFNPAD
VNTFVSVSCGGACVKASTCVSELLEQVQSLGVSTVPSSQLHRITSIPKGFGETNTHHIRSPGST
SESSKLLDVYPLELRFPLEPNKCTECPVTLTNRTDCYVGVWITPAKPHTCHGFYFSYLWWQFPS
SSFFQIMDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLNPSISSSTDNDML
RRVEELGGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDLDMCWILASHRAG
YVSIWNYNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFATGDGYGYICIYA
YTMDKVKKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTRTFDAHTSGVQHV
RFNPADVNTFVSVSCGGACVKASTCVSELLEQVQSLGVSTVPSSQLHRITSIPKGFGETNTHHI
RSPGSTSESSKLLDVYPLELRFPLEPNKCTECPVTLTNRTDCYVGVWITPAKPHTCHGFYFSYL
WWQFPSSSFFQIMDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLNPSISSS
TDNDMLRRVEELGGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDLDMCWIL
ASHRAGYVSIWNYNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFATGDGYG
YICIYAYTMDKVKKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTRTFDAHT
SGVQHVRFNPADVNTFVSVSCGGACVKASTCVSELLEQVQSLGVSTVPSSQLHRITSIPKGFGE
TNTHHIRSPGSTSESSKLLDVYPLELRFPLEPNKCTECPVTLTNRTDCYVGVWITPAKPHTCHG
FYFSYLWWQFPSSSFFQIMDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLN
PSISSSTDNDMLRRVEELGGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDL
DMCWILASHRAGYVSIWNYNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFA
TGDGYGYICIYAYTMDKVKKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTR
TFDAHTSGVQHVRFNPADVNTFVSVSCGGACVK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress