Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d004877_circ_g.4 |
| ID in PlantcircBase | zma_circ_007280 |
| Alias | Zm02circ00082, zma_circ_0000831, GRMZM2G122038_C1 |
| Organism | Zea mays |
| Position | chr2: 145971501-145973728 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ue-circRNA |
| Identification method | CIRI2, find_circ |
| Parent gene | Zm00001d004877 |
| Parent gene annotation |
Coatomer subunit beta'-3 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d004877_circ_g.1 Zm00001d004877_circ_g.2 Zm00001d004877_circ_g.3 |
| Support reads | NA |
| Tissues | leaf, endosperm, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d004877_T001:5 Zm00001d004877_T002:5 Zm00001d004877_T003:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.052014854 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
145973123-145971503(-) |
| Potential amino acid sequence |
MDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLNPSISSSTDNDMLRRVEEL GGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDLDMCWILASHRAGYVSIWN YNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFATGDGYGYICIYAYTMDKV KKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTRTFDAHTSGVQHVRFNPAD VNTFVSVSCGGACVKASTCVSELLEQVQSLGVSTVPSSQLHRITSIPKGFGETNTHHIRSPGST SESSKLLDVYPLELRFPLEPNKCTECPVTLTNRTDCYVGVWITPAKPHTCHGFYFSYLWWQFPS SSFFQIMDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLNPSISSSTDNDML RRVEELGGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDLDMCWILASHRAG YVSIWNYNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFATGDGYGYICIYA YTMDKVKKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTRTFDAHTSGVQHV RFNPADVNTFVSVSCGGACVKASTCVSELLEQVQSLGVSTVPSSQLHRITSIPKGFGETNTHHI RSPGSTSESSKLLDVYPLELRFPLEPNKCTECPVTLTNRTDCYVGVWITPAKPHTCHGFYFSYL WWQFPSSSFFQIMDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLNPSISSS TDNDMLRRVEELGGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDLDMCWIL ASHRAGYVSIWNYNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFATGDGYG YICIYAYTMDKVKKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTRTFDAHT SGVQHVRFNPADVNTFVSVSCGGACVKASTCVSELLEQVQSLGVSTVPSSQLHRITSIPKGFGE TNTHHIRSPGSTSESSKLLDVYPLELRFPLEPNKCTECPVTLTNRTDCYVGVWITPAKPHTCHG FYFSYLWWQFPSSSFFQIMDPHSTLVVTLVMDPLQLGLGLQDTEDKFQVLMIVMESQKDLENLN PSISSSTDNDMLRRVEELGGEVHRAILRAVSCDPASCKPEVVHSVPMVISAKTLENVLSIDVDL DMCWILASHRAGYVSIWNYNTQGRVTALKVTKEAGMLHSLTRTRSATTSCVYSAKFITRKKLFA TGDGYGYICIYAYTMDKVKKFEAYHGKPVSLLAVHSTYPFLLSSSSCDRSIKLWAWDQQWACTR TFDAHTSGVQHVRFNPADVNTFVSVSCGGACVK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |