Plant Circular RNA Database

Detail information of AT2G22010_circ_g.4

			
						 General Information
					
						CircRNA Name
						AT2G22010_circ_g.4
					
						ID in PlantcircBase
						ath_circ_014326
					
						Alias
						2:9365029-9366022
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 9365029-9366022  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G22010						
					
						Parent gene annotation
						
							Related to KPC1
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G22010_circ_g.1 AT2G22010_circ_g.2 AT2G22010_circ_g.3 AT2G22010_circ_g.5 						
					
						Support reads
						1/1
					
						Tissues
						flower
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G22010.2:4
AT2G22010.1:4

General Information
CircRNA Name	AT2G22010_circ_g.4
ID in PlantcircBase	ath_circ_014326
Alias	2:9365029-9366022
Organism	Arabidpsis thaliana
Position	chr2: 9365029-9366022 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G22010
Parent gene annotation	Related to KPC1
Parent gene strand	-
Alternative splicing	AT2G22010_circ_g.1 AT2G22010_circ_g.2 AT2G22010_circ_g.3 AT2G22010_circ_g.5
Support reads	1/1
Tissues	flower
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G22010.2:4 AT2G22010.1:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGAATCCATTTTGCTGAGAACCAGAAGTAGCTGTACAACCCACATGCACAATGCATACATTCCC
CTTTGCTTCCATCGAGAGAACAATGAGATGCGGAACctgatacttttcttgcatttctcgcacc
gagacagaaaattcagtgatggtccagctcagtgtgttgaatagacggttaagaaaagtagaaa
gtaattca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 637
Transcript exons: 9365029-9365160,9365239-9365520,9365630-9365713,9365884-
9366022
CTGATACTTTTCTTGCATTTCTCGCACCGAGACAGAAAATTCAGTGATGGTCCAGCTCAGTGTG
TTGAATAGACGGTTAAGAAAAGTAGAAAGTAATTCACCATCATTGATACAAGCATCTCGTAGAA
GCGCCTGGAAAACAGTAGACGAAAACGAAGACTCTCCGTTCTTTAAAGAACTAAACCCAGAACC
TTTGCAAAGACGAAGAAATATATTTGTGACAGGGATCCAAGATCTGTTGTCAAACGCTGCCAGT
AGTGCTGCAGGCATGTGTCGAGTAGCTGCCTCATTGTTCTCGAAAGCTTCCAAGTACTCTTTGT
ACTGTACCAGGACGGATATTGACTGGAGAAGTAGATCTTTAAGATCTGTATTCGATATCCTTGA
ATCGTTGAAGTGTGTAACTACGAAAGTGATAAATGATGAAAGTCCTTGTTTGATGAATGTTGTT
GATGGGACAAACGGAGGATCGCTCTTGCGAAGCACATGGAAACAGTCTACCAAAGATTCAAGGT
AGAACTCTGGAATATAAACAAACACAGAATCCATTTTGCTGAGAACCAGAAGTAGCTGTACAAC
CCACATGCACAATGCATACATTCCCCTTTGCTTCCATCGAGAGAACAATGAGATGCGGAAC
						
					

						Genomic sequence
						
							CTGATACTTTTCTTGCATTTCTCGCACCGAGACAGAAAATTCAGTGATGGTCCAGCTCAGTGTG
TTGAATAGACGGTTAAGAAAAGTAGAAAGTAATTCACCATCATTGATACAAGCATCTCGTAGAA
GCGCCTAGACGAAAAAGAAAATCAAAATCCAATATGTAGACTGAGGATCAGATAGGAACAAAGT
CAAATCAATCTAACCAACCTGGAAAACAGTAGACGAAAACGAAGACTCTCCGTTCTTTAAAGAA
CTAAACCCAGAACCTTTGCAAAGACGAAGAAATATATTTGTGACAGGGATCCAAGATCTGTTGT
CAAACGCTGCCAGTAGTGCTGCAGGCATGTGTCGAGTAGCTGCCTCATTGTTCTCGAAAGCTTC
CAAGTACTCTTTGTACTGTACCAGGACGGATATTGACTGGAGAAGTAGATCTTTAAGATCTGTA
TTCGATATCCTTGAATCGTTGAAGTGTGTAACTACGAAAGTGATCTGGAAACCCAAGAATTTGC
AATGACCATGTTAGAGCTAATCAACTAACAGTCAGCCATGAGGAAAAATAACAGACAAAAAAGA
TTGTGTGATAAGAGTTTAGGCATACAAATGATGAAAGTCCTTGTTTGATGAATGTTGTTGATGG
GACAAACGGAGGATCGCTCTTGCGAAGCACATGGAAACAGTCTACCTGAGGAAATAATCAAAGA
GATTGTAAACTTAGGGATTTCATTGAGAAACAGAGAAAACGCAACAGAATAAGTTGTTGGAAGA
TCTACTAACTTTGATCAAAGAGAAACTGAAACATGTTCATTTGACATTTATATCAAGAAGTACC
AGAAATGTGCAAAAGCTGTTTACCAAAGATTCAAGGTAGAACTCTGGAATATAAACAAACACAG
AATCCATTTTGCTGAGAACCAGAAGTAGCTGTACAACCCACATGCACAATGCATACATTCCCCT
TTGCTTCCATCGAGAGAACAATGAGATGCGGAAC
						
					

			
		

Sequences
Splice junction sequence	AGAATCCATTTTGCTGAGAACCAGAAGTAGCTGTACAACCCACATGCACAATGCATACATTCCC CTTTGCTTCCATCGAGAGAACAATGAGATGCGGAACctgatacttttcttgcatttctcgcacc gagacagaaaattcagtgatggtccagctcagtgtgttgaatagacggttaagaaaagtagaaa gtaattca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 637 Transcript exons: 9365029-9365160,9365239-9365520,9365630-9365713,9365884- 9366022 CTGATACTTTTCTTGCATTTCTCGCACCGAGACAGAAAATTCAGTGATGGTCCAGCTCAGTGTG TTGAATAGACGGTTAAGAAAAGTAGAAAGTAATTCACCATCATTGATACAAGCATCTCGTAGAA GCGCCTGGAAAACAGTAGACGAAAACGAAGACTCTCCGTTCTTTAAAGAACTAAACCCAGAACC TTTGCAAAGACGAAGAAATATATTTGTGACAGGGATCCAAGATCTGTTGTCAAACGCTGCCAGT AGTGCTGCAGGCATGTGTCGAGTAGCTGCCTCATTGTTCTCGAAAGCTTCCAAGTACTCTTTGT ACTGTACCAGGACGGATATTGACTGGAGAAGTAGATCTTTAAGATCTGTATTCGATATCCTTGA ATCGTTGAAGTGTGTAACTACGAAAGTGATAAATGATGAAAGTCCTTGTTTGATGAATGTTGTT GATGGGACAAACGGAGGATCGCTCTTGCGAAGCACATGGAAACAGTCTACCAAAGATTCAAGGT AGAACTCTGGAATATAAACAAACACAGAATCCATTTTGCTGAGAACCAGAAGTAGCTGTACAAC CCACATGCACAATGCATACATTCCCCTTTGCTTCCATCGAGAGAACAATGAGATGCGGAAC
Genomic sequence	CTGATACTTTTCTTGCATTTCTCGCACCGAGACAGAAAATTCAGTGATGGTCCAGCTCAGTGTG TTGAATAGACGGTTAAGAAAAGTAGAAAGTAATTCACCATCATTGATACAAGCATCTCGTAGAA GCGCCTAGACGAAAAAGAAAATCAAAATCCAATATGTAGACTGAGGATCAGATAGGAACAAAGT CAAATCAATCTAACCAACCTGGAAAACAGTAGACGAAAACGAAGACTCTCCGTTCTTTAAAGAA CTAAACCCAGAACCTTTGCAAAGACGAAGAAATATATTTGTGACAGGGATCCAAGATCTGTTGT CAAACGCTGCCAGTAGTGCTGCAGGCATGTGTCGAGTAGCTGCCTCATTGTTCTCGAAAGCTTC CAAGTACTCTTTGTACTGTACCAGGACGGATATTGACTGGAGAAGTAGATCTTTAAGATCTGTA TTCGATATCCTTGAATCGTTGAAGTGTGTAACTACGAAAGTGATCTGGAAACCCAAGAATTTGC AATGACCATGTTAGAGCTAATCAACTAACAGTCAGCCATGAGGAAAAATAACAGACAAAAAAGA TTGTGTGATAAGAGTTTAGGCATACAAATGATGAAAGTCCTTGTTTGATGAATGTTGTTGATGG GACAAACGGAGGATCGCTCTTGCGAAGCACATGGAAACAGTCTACCTGAGGAAATAATCAAAGA GATTGTAAACTTAGGGATTTCATTGAGAAACAGAGAAAACGCAACAGAATAAGTTGTTGGAAGA TCTACTAACTTTGATCAAAGAGAAACTGAAACATGTTCATTTGACATTTATATCAAGAAGTACC AGAAATGTGCAAAAGCTGTTTACCAAAGATTCAAGGTAGAACTCTGGAATATAAACAAACACAG AATCCATTTTGCTGAGAACCAGAAGTAGCTGTACAACCCACATGCACAATGCATACATTCCCCT TTGCTTCCATCGAGAGAACAATGAGATGCGGAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.250979209

Conservation Information
Conserved circRNAs	NA
PMCS	0.250979209

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G22010_circ_g.4

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