Detail information of Os06g0126500_circ_g.2


General Information
CircRNA Name Os06g0126500_circ_g.2
ID in PlantcircBase osa_circ_029472
Alias NA
Organism Oryza sativa
Position chr6: 1414882-1415138  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0126500
Parent gene annotation Ubiquitin domain containing protein. (Os06t0126500-01)
Parent gene strand +
Alternative splicing Os06g0126500_circ_g.1 Os06g0126500_circ_g.3 Os06g0126500_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0126500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCCCGCCGCCTCATCGAGGAGCGCCGCAATGGCCACCTCGAGAAGGCCGCCAAGGCCGTCGCC
GCCGTCACCGCCGAGGTCGACAAGCTCGCCCCCAAGgggagctgaagaagatggtggcggcgcg
aacggggctgcatccggacgaccagaaggtgatgtacaaggacaaggagagggactccaaggcg
ttcctgga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 257
Transcript exons: 1414882-1415138
GGGAGCTGAAGAAGATGGTGGCGGCGCGAACGGGGCTGCATCCGGACGACCAGAAGGTGATGTA
CAAGGACAAGGAGAGGGACTCCAAGGCGTTCCTGGACATGGCCGGCGTCAAGGACAGGTCCAAG
CTGGTGGTCGTCGAGGACCCCGAGGCACGCGCCCGCCGCCTCATCGAGGAGCGCCGCAATGGCC
ACCTCGAGAAGGCCGCCAAGGCCGTCGCCGCCGTCACCGCCGAGGTCGACAAGCTCGCCCCCAA
G

Genomic sequence GGGAGCTGAAGAAGATGGTGGCGGCGCGAACGGGGCTGCATCCGGACGACCAGAAGGTGATGTA
CAAGGACAAGGAGAGGGACTCCAAGGCGTTCCTGGACATGGCCGGCGTCAAGGACAGGTCCAAG
CTGGTGGTCGTCGAGGACCCCGAGGCACGCGCCCGCCGCCTCATCGAGGAGCGCCGCAATGGCC
ACCTCGAGAAGGCCGCCAAGGCCGTCGCCGCCGTCACCGCCGAGGTCGACAAGCTCGCCCCCAA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.397264948
Functional Information
Coding potential Y
Potential coding position 1415069-1414887(+)
1414897-1414887(+)
1414924-1415109(-)
1415055-1415109(-)
Potential amino acid sequence MATSRRPPRPSPPSPPRSTSSPPRGAEEDGGGANGAASGRPEGDVQGQGEGLQGVPGHGRRQGQ
VQAGGRRGPRGTRPPPHRGAPQWPPREGRQGRRRRHRRGRQARPQGELKKMVAARTGLHPDDQK
VMYKDKERDSKAFLDMAGVKDRSKLVVVEDPEARARRLIEERRNGHLEKAAKAVAAVTAEVDKL
APKGS*(+)
MVAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPEARARRLIEERRNGHLEKA
AKAVAAVTAEVDKLAPKGS*(+)
MQPRSRRHHLLQLPLGASLSTSAVTAATALAAFSRWPLRRSSMRRRARASGSSTTTSLDLSLTP
AMSRNALESLSLSLYITFWSSGCSPVRAATIFFSSPWGRACRPRR*(-)
MRRRARASGSSTTTSLDLSLTPAMSRNALESLSLSLYITFWSSGCSPVRAATIFFSSPWGRACR
PRR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017