Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0126500_circ_g.2 |
ID in PlantcircBase | osa_circ_029472 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 1414882-1415138 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0126500 |
Parent gene annotation |
Ubiquitin domain containing protein. (Os06t0126500-01) |
Parent gene strand | + |
Alternative splicing | Os06g0126500_circ_g.1 Os06g0126500_circ_g.3 Os06g0126500_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0126500-01:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.397264948 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1415069-1414887(+) 1414897-1414887(+) 1414924-1415109(-) 1415055-1415109(-) |
Potential amino acid sequence |
MATSRRPPRPSPPSPPRSTSSPPRGAEEDGGGANGAASGRPEGDVQGQGEGLQGVPGHGRRQGQ VQAGGRRGPRGTRPPPHRGAPQWPPREGRQGRRRRHRRGRQARPQGELKKMVAARTGLHPDDQK VMYKDKERDSKAFLDMAGVKDRSKLVVVEDPEARARRLIEERRNGHLEKAAKAVAAVTAEVDKL APKGS*(+) MVAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPEARARRLIEERRNGHLEKA AKAVAAVTAEVDKLAPKGS*(+) MQPRSRRHHLLQLPLGASLSTSAVTAATALAAFSRWPLRRSSMRRRARASGSSTTTSLDLSLTP AMSRNALESLSLSLYITFWSSGCSPVRAATIFFSSPWGRACRPRR*(-) MRRRARASGSSTTTSLDLSLTPAMSRNALESLSLSLYITFWSSGCSPVRAATIFFSSPWGRACR PRR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |