Detail information of BGIOSGA003669_circ_g.3


General Information
CircRNA Name BGIOSGA003669_circ_g.3
ID in PlantcircBase osi_circ_002111
Alias 1:21048414|21050289
Organism Oryza sativa ssp. indica
Position chr1: 21048414-21050289  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA003669
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003669_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA003669-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACAATGCATTCTGAGAAGAGTAATGGTAGCTGTGGTGATATTGATGGTGGAACCAATGGAAC
TTCCTTCGCATATTTGAAACAAGAGGAGACATCTAGgttcaacttttgcaaaacaaagaggacg
actataagattatcagaaaggaagctaaaagttcactcttggcactatccactgatgaatatta
tcatactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCAACTTTTGCAAAACAAAGAGGACGACTATAAGATTATCAGAAAGGAAGCTAAAAGTTCAC
TCTTGGCACTATCCACTGATGAATATTATCATACTCTTATAATAGAGGAGGGTTTAGTCCGGGT
TCCTCTAGTTGGCTCAGCTGTGTATAAAGCATTTAGACCTCTTCCACACTCATGGCCCTCTTTC
CCTGATGGCTCTGAGATCCAGCGGAGTTCTCGCCCTTCAAAATATGGTGCTACTGAGTTGCTTC
TTGGCCTGAGTGTTGGCGAGAAGGAAACGGAGCCTGATGAAGCAAAAGTTAATGCTATGATAGG
CCGTTCAAATCAGCAGTTTCTTGCGCGCATTGGTGCTATTGAGTTGGATGATGAAGGAAATGAA
CAATCTGGTGGATCTCAAAGGAATGATCTCTATACCATTTTACCATGGGTAGATGGAGTTGCAC
GATTAGTTTTAATCATTGGTCTTGAAGATGCTTCTGCAATTGCAAAGGCTGCTAAAGCAATTGG
TGATGCGTCGAAAAATGAACATATGCGCTCCTCATTCAAGGAAGCTGGAGCTGTCAAACCTCTA
CTTCAGTTACTGAATCATACTGATGTGCCTGTTAGAAAAGCCGCTGTTTATGCATTGGAAAAAC
TAAGTGTCAGGTATATTATTTCCCTTTCTTCAAACTCAAGCGTTTTTTAGCAATTAGATCACAC
AGTATTCTGTAGAACAGTCTTACATATTAATCCCATTACTTATTTGCTTTACTTTTAGTTGCTT
AGGTGTAGCTGTTATGAGTGTTATGACTTAAAAGAATGGGATTTGAAAACCAGCCCGACCACTT
GATGATCATATACCCTGTCGAAAGGGGGAAAAAGGAAATAATCATGCCAAATGCTTGGAAGGGG
CTGTATGGGCTCAATGTGCTTCATTTTGACAACAATTTCCATTGAAATGACAGTTGGCAACAAT
AGTTTGTGTCTTATCTTTTTGTAGGAGCATCTTATCTCTTAGGAATAGCTATATAGTTCAAAGC
ATCTCTAAACAGAAGTTGGTAGGACCTATCACTATAAAAGAGAAGGCAACCGGTTGAGATTCAA
GAAATGAAGAGAAGTTTGTTCGTCTATCTCTTCCTTACCCTTTTGATGTCGTTAAAGATCATCA
GACATTGGTCACGCAGCTTGGGTCCATGGTGATCTAATCATAGTGCGCCATGTAAAAGAAAACT
TGTTTATTATAGTATAGCATATTAAAGAGGAAATTTATGCTGTAGTGAAGTTTTCATTCAGCAG
AGACCATATAGTGGCTTCAACGTTCTGAAGTATATGTAAATTTCTTTTTTTCTTCCTGAAAGGA
GTACTAAATGGTTTCTCAATTTGTTGTGATATCCATATATTTTCCCCTTTTCTATAACCTTCAT
TCCTTTTTTTTTCTCTCTTTTGTAGTTCCATAGTCTGTGAGCAGATCAAAACAGATGGTGGTCT
AAAACTGCTTGCAGACATAGTGAAGGATCCCAATACCCCAGTTGAGCAACTGGAGAAGGTCATG
AGCTTTAAAAAAGCCTAGTTATTCTATTGTAATTTTGTATCATGCCAAGTACTGACTAGATAAT
TTTTGTACAGATAATCATCATGCTTTCTCGAATATTCAACACGGGTATCAGCATGGTAGCTGTG
GTGAGTCAGGCATCTACATGTGTCAACTGTATTTTGTTATATTTTTCCAAACCGGTGTTTACAA
TGTTGTGAATTTATCAGCCTGATAGCTCAGCTATTAATGGGTCTGAGGATACAATGCATTCTGA
GAAGAGTAATGGTAGCTGTGGTGATATTGATGGTGGAACCAATGGAACTTCCTTCGCATATTTG
AAACAAGAGGAGACATCTAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021