Detail information of Zm00001d021187_circ_g.1


General Information
CircRNA Name Zm00001d021187_circ_g.1
ID in PlantcircBase zma_circ_002558
Alias circ1200
Organism Zea mays
Position chr7: 145306785-145306971  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d021187
Parent gene annotation Hydroxyacylglutathione hydrolase 2 mitochondrial
Parent gene strand +
Alternative splicing Zm00001d021187_circ_g.2 Zm00001d021187_circ_g.3
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d021187_T002:1
Zm00001d021187_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGAGGACACTGTATGGAGTGGGTCGTGTTTTTGGCGCAGGACGGTTTCTCTGCAACATGACCA
ACGTCTCTTCGTCGCTGCAAATTGAGCTTgatgagggggcagccgtccttgctgccaagcgtgc
ggaagcaatggcccgggaagccactgctgtatggaatcggcaccctgttggtcatgcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGAGGGGGCAGCCGTCCTTGCTGCCAAGCGTGCGGAAGCAATGGCCCGGGAAGCCACTGCTG
TATGGAATCGGCACCCTGTTGGTCATGCCACTGAGGACACTGTATGGAGTGGGTCGTGTTTTTG
GCGCAGGACGGTTTCTCTGCAACATGACCAACGTCTCTTCGTCGCTGCAAATTGAGCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.210783779
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b