Detail information of Os05g0542200_circ_g.9


General Information
CircRNA Name Os05g0542200_circ_g.9
ID in PlantcircBase osa_circ_042167
Alias NA
Organism Oryza sativa
Position chr5: 26916751-26917028  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0542200
Parent gene annotation Alpha/beta hydrolase fold-1 domain containing protein. (Os05t054
2200-01);Similar to catalytic/ hydrolase. (Os05t0542200-02);Simi
lar to cDNA clone:J023112L03, full insert sequence. (Os05t054220
0-03)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os05t0542200-02:2
Os05t0542200-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCGATGGGTTCATCGACGGCGTACGGACATACCGATGACGAGGAGCACCTTGGTGGCGCCGCG
GCCGAAGCGGCGGTAGAAGAGGCGGACGCCGTCCCAtcctcgtcgtcggcggccggctccagcg
acccggtcagccccttgatctgcgggccccacgagtcgtgcgtccccgccaatccttcacgccc
ccaaccac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 278
Transcript exons: 26916751-26917028
TCCTCGTCGTCGGCGGCCGGCTCCAGCGACCCGGTCAGCCCCTTGATCTGCGGGCCCCACGAGT
CGTGCGTCCCCGCCAATCCTTCACGCCCCCAACCACACCCACCATTTCTCAAATCAGAACCAAG
AAAACAAAAAGGCAAAAAAAAAACGCAGAAAATTTTCGATCGCCGGCAAAGGCGATGGGTTCAT
CGACGGCGTACGGACATACCGATGACGAGGAGCACCTTGGTGGCGCCGCGGCCGAAGCGGCGGT
AGAAGAGGCGGACGCCGTCCCA

Genomic sequence TCCTCGTCGTCGGCGGCCGGCTCCAGCGACCCGGTCAGCCCCTTGATCTGCGGGCCCCACGAGT
CGTGCGTCCCCGCCAATCCTTCACGCCCCCAACCACACCCACCATTTCTCAAATCAGAACCAAG
AAAACAAAAAGGCAAAAAAAAAACGCAGAAAATTTTCGATCGCCGGCAAAGGCGATGGGTTCAT
CGACGGCGTACGGACATACCGATGACGAGGAGCACCTTGGTGGCGCCGCGGCCGAAGCGGCGGT
AGAAGAGGCGGACGCCGTCCCA
Conservation Information
Conserved circRNAs NA
PMCS 0.224059472
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study