Detail information of Os07g0507700_circ_g.3


General Information
CircRNA Name Os07g0507700_circ_g.3
ID in PlantcircBase osa_circ_033988
Alias Os_ciR1827
Organism Oryza sativa
Position chr7: 19285231-19287991  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
Parent gene Os07g0507700
Parent gene annotation Bromodomain domain containing protein. (Os07t0507700-01)
Parent gene strand +
Alternative splicing Os07g0507700_circ_g.1 Os07g0507700_circ_g.2 Os07g0507700_circ_g.4 Os07g0507700_circ_g.5 Os07g0507700_circ_g.6 Os07g0507700_circ_g.7
Support reads 7/2
Tissues root/root, pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0507700-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCTCTTGCTGATGTGCTTTTTTAATCTCCTAGGGGAAGAAAATAGACCCTGCGAAATTGCAGT
TAGAAAAGGAGAGGCTGGAAAAAAGGCAGCAAGAAGcttgcctctatctgaatcttctggccct
gaaaagaagctaaaattatttttctttgtcaagaccaaaaagtatttattcaaaccaaacacta
tgaccaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1154
Transcript exons: 19285231-19285969,19286047-19286095,19286179-19286243,19
286353-19286407,19286481-19286540,19287686-19287804,1928
7925-19287991
CTTGCCTCTATCTGAATCTTCTGGCCCTGAAAAGAAGCTAAAATTATTTTTCTTTGTCAAGACC
AAAAAGTATTTATTCAAACCAAACACTATGACCACACAAGCTTGTAAGAAGAGAAGAGCAGTTT
ATATAAGCAGTGAATCAGAAGACTCTGGTACAGACTCTGAGGTTGAGGGAAGCAAACTCTCCAA
AAAAGATGGGGTCACGTCAGTCTATACATGTGGTCACCAGCCAACCTCTAAGAATAAGGTTGAT
CCGATGAATACTAGCAAGTCAAGGCAGTGTGGAAGTATTCTGAAGAAGCTCATGGATCACAAAA
GTGGATGGATTTTTAATACACCAGTTGATCCAGTGGTATATGGAATTCCTGATTACTTTGATGT
TATTCGCAATCCGATGGACTTGGGTACTGTTAAAAGGAAACTCACAAGCAAGCAATATTCCAAC
CCTTATGAGTTTGCAGCAGATGTGAGGCTAACATTCTCGAATGCGATGAAGTATAATCCTCCAG
GAAATGATGTCCACGGAATAGCTGATCAATTGAACAAAATATTTGATTCGGAATGGAAATTATT
GGAAAGGAAATGGAAAGACAGAAATTTGGTACAAGAGCAGCCATCACTGAAGGTATTAAAGGCT
CAGCCTGCTGTTACCCCAAAACCTGTGCTACCTAAGGGGGTGACTGCAGGCACAAATTCAGCTG
TGAGCAAGACACTGGCAACTGCATTATCCTCCAAAGTAAAAATTAAATTTTCTGTGCGAGGCTC
TGAGCTGACCTCTTCCAAAGACACGCCTTTGCAAGCAGTTGGCAGAAGAGACGGCACAATTAAC
CAATCTCTCCCTTGCACCAAGGACAATGCTAAGACACCAAGGATACAATCAAGTGAGGACAGAT
CTGAATCAACTGGAAATGAATTGCGGCCTTGCGATGATGCTTCTACTTCACCTCTTGCTTCTTC
CAGACAAGAAGAGGAATATTTGCCTGAAGAACCTTTATCACCAAGCAAGGCTCTTCGTGCAGCA
ATGCTCAAGAGTCGTTTTGCTGGTACAATTGTCAAGGCGCAGCAGAAAGCACTTCTGGATCATG
GGAAGAAAATAGACCCTGCGAAATTGCAGTTAGAAAAGGAGAGGCTGGAAAAAAGGCAGCAAGA
AG

Transcript length: 304
Transcript exons: 19285231-19285441,19286497-19286540,19287943-19287991
CTTGCCTCTATCTGAATCTTCTGGCCCTGAAAAGAAGCTAAAATTATTTTTCTTTGTCAAGACC
AAAAAGTATTTATTCAAACCAAACACTATGACCACACAAGCTTGTAAGAAGAGAAGAGCAGTTT
ATATAAGCAGTGAATCAGAAGACTCTGGTACAGACTCTGAGGTTGAGGGAAGCAAACTCTCCAA
AAAAGATGGGGTCACGTCATTGCGATGATGCTTCTACTTCACCTCTTGCTTCTTCCAGACAAGG
CGAAATTGCAGTTAGAAAAGGAGAGGCTGGAAAAAAGGCAGCAAGAAG

Genomic sequence CTTGCCTCTATCTGAATCTTCTGGCCCTGAAAAGAAGCTAAAATTATTTTTCTTTGTCAAGACC
AAAAAGTATTTATTCAAACCAAACACTATGACCACACAAGCTTGTAAGAAGAGAAGAGCAGTTT
ATATAAGCAGTGAATCAGAAGACTCTGGTACAGACTCTGAGGTTGAGGGAAGCAAACTCTCCAA
AAAAGATGGGGTCACGTCAGTCTATACATGTGGTCACCAGCCAACCTCTAAGAATAAGGTTGAT
CCGATGAATACTAGCAAGTCAAGGCAGTGTGGAAGTATTCTGAAGAAGCTCATGGATCACAAAA
GTGGATGGATTTTTAATACACCAGTTGATCCAGTGGTATATGGAATTCCTGATTACTTTGATGT
TATTCGCAATCCGATGGACTTGGGTACTGTTAAAAGGAAACTCACAAGCAAGCAATATTCCAAC
CCTTATGAGTTTGCAGCAGATGTGAGGCTAACATTCTCGAATGCGATGAAGTATAATCCTCCAG
GAAATGATGTCCACGGAATAGCTGATCAATTGAACAAAATATTTGATTCGGAATGGAAATTATT
GGAAAGGAAATGGAAAGACAGAAATTTGGTACAAGAGCAGCCATCACTGAAGGTATTAAAGGCT
CAGCCTGCTGTTACCCCAAAACCTGTGCTACCTAAGGGGGTGACTGCAGGCACAAATTCAGCTG
TGAGCAAGACACTGGCAACTGCATTATCCTCCAAAGTATGATCACAGTCATGTACCCTCATTCA
GTGATTTTTCTTCTTGGGACTTTGATCAAAGTACTGCTCTCTTTGCAGGTAAAAATTAAATTTT
CTGTGCGAGGCTCTGAGCTGACCTCTTCCAAAGGTGTGAATAGAATAAACTCTATGCATACAAT
CTTTCCATTGTTGATTGTATTTGACAGCCATTACCAATGCTTTTCAATTCAGACACGCCTTTGC
AAGCAGTTGGCAGAAGAGACGGCACAATTAACCAATCTCTCCCTTGCACCAAGGTTTTGGGCAC
GAGCTCCTTTGTTTATACTTGAGTATTCTTATCTGAGTCTTGGTATCATTAGCTAAACAATTGT
GTGATCCCCCTCTTGTCTTGTCTTTTATTTTTAGGACAATGCTAAGACACCAAGGATACAATCA
AGTGAGGACAGATCTGAATCAACTGGTATGTTTATGATTTCCACGTAATTTTATCCCATACTGT
TTTATTTTACTAAAGCACTCAATTATTATCTTAGGAAATGAATTGCGGCCTTGCGATGATGCTT
CTACTTCACCTCTTGCTTCTTCCAGACAAGGTTGGACATGCTATCTATTTATCCATCTATTTGT
GCATGTTAATTTGCATACTAGTATCTCTGTTCTCAAAAGGATGATGTCCTAGATTCATTGCAAA
CACAGTCAAACCTCAAAAATCTTAAATCATTAATAAATGAAAAAATACCAGGATTTAAAAATCA
TATTAGTAGATTTGTGAGGAAAAACTGTCATATGGTTATATTTTAAATATTGTTCCCATACTAT
CATAAAAATACAAACTGATTCCATTTGTCATCCTTGAGTTTTCGGCCATGGCGCAATTCTGTCG
ATTTCCTGCACGTGATTTTTCGGTCGTCTCATCATTGTTTGTTTTTCATCTGAGTCCTGTGCAC
ACTGTGGTCCGTTGTCTGCATCCGAGACCCACTCACATCCGTTGTCCAACGTCCCACGCATGAC
CCTGCCTCACCTTGGCCACATGCACCCCTCTTCCGTGTGCCCATGGTGCTCCCCTCCTGATCCA
TCCTTTCCTTTCGTCCATCTCCCTCTTCCTATGCTGCGAGAAGCAGAGCTGCCACAAGCAGAGG
CAAAGCACAGAGCGTGATTCACTTAGCTAAGCTGAACATGATCCCTTAATTTTTCTCCATCAGA
TAAGCATCGAGAAGAAGTGGAACAAATTTCTGGATTGATTCATTGTTTATGTGAGTAGTTCTCA
AGTCTGGTTTAGTTACATTACGTAAATGTTTCTGATCCACACCCTTCTTTTCGTAGGACGATGA
AAAAGAATGGATAAAGATCCCAAGAATACATAGTTTGATCTGAATACTCATACCTTGAGAATAG
CACATCTACAAGTAGGATTTCCTCTGTGATCGTACCAAAACATGAGTTCCATTTGGATTTTCTT
TTTTATCATTGGATTTCTTCAATGCTATAGTGTCATTCTTCTGGCGCTTAATGCTATCTATTCC
CAATTACAATTGTGTACAGCCCTACACCCGTTGCAATGCACGGTCATTTTGCTAGTAAATATAT
AACTTGAGAAAGTAATGATAAAACATGTGCATTGGAGACTGCCGATGTCCTAAATGACAACCAT
TTGAGAACAGAGGGTAGTAACTTTATCATCTATTCTTTCCATATGTTCCTTTGCTAATATATTG
CATCTTATGATGTGAATTTTCAGAAGAGGAATATTTGCCTGAAGAACCTTTATCACCAAGCAAG
GCTCTTCGTGCAGCAATGCTCAAGAGTCGTTTTGCTGGTACAATTGTCAAGGCGCAGCAGAAAG
CACTTCTGGATCATGTATTATTTCTGAAATGTGTACTGAAATTTGTAGATTTCAATTAGGCTAT
TCCTTCGCATAGGACAAGTTCTAGTCTACGTCTGTGTAGCTCTTGCTGATGTGCTTTTTTAATC
TCCTAGGGGAAGAAAATAGACCCTGCGAAATTGCAGTTAGAAAAGGAGAGGCTGGAAAAAAGGC
AGCAAGAAG
Conservation Information
Conserved circRNAs osi_circ_007204*
PMCS 0.474536347
Functional Information
Coding potential Y
Potential coding position 19285323-19285268(+)
Potential amino acid sequence MTTQACKKRRAVYISSESEDSGTDSEVEGSKLSKKDGVTSVYTCGHQPTSKNKVDPMNTSKSRQ
CGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYEFAADVR
LTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKWKDRNLVQEQPSLKVLKAQPAVTPKPV
LPKGVTAGTNSAVSKTLATALSSKVKIKFSVRGSELTSSKDTPLQAVGRRDGTINQSLPCTKDN
AKTPRIQSSEDRSESTGNELRPCDDASTSPLASSRQEEEYLPEEPLSPSKALRAAMLKSRFAGT
IVKAQQKALLDHGKKIDPAKLQLEKERLEKRQQEACLYLNLLALKRS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017