Detail information of BGIOSGA018366_circ_igg.1


General Information
CircRNA Name BGIOSGA018366_circ_igg.1
ID in PlantcircBase osi_circ_015268
Alias Chr05:13107385_13109201(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 14077927-14079743  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA018366_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATGTCATTGTTGTCCTGCTGACCAAACAGTAGAATTGCACGGTTTCTCAAATGTGTAGTGCC
ATACAAAGAGAAGATAAATCCCCAGATGTGTGAAATcctccactatgagttggacatttgcata
gttgttgttgtttgttccaccaggtacctctacaaattgatcggcaattctgatgtgctctgca
tttatcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCACTATGAGTTGGACATTTGCATAGTTGTTGTTGTTTGTTCCACCAGGTACCTCTACAAA
TTGATCGGCAATTCTGATGTGCTCTGCATTTATCCTCAGATCCTCCGGAGTTGCCATAGCTATC
AGCTGAATTGCCTTCTCTGATCCAAAAGTATCATTAGCCCATGTTCGGACACTCCGCATGAACT
TAGCTGCTGCCATTCCATTGTTGGCCACTAATACACTGTGAATTGGTGTTTTGCCACCAAGTGC
CGTACAAAACTCAACAACCTTGGAGACTGAAGCATGCCTCCCATTATGTGTTTCATTGATAATC
CCATTCATTTGGTAGGAACCTGGGACCGTAGGCCCCCTGGGATCTTCGGAACCACTGTAAAAGA
AAGGATCATTTATGGTCAGGGGCACAAATAATGTACTAGAAAACAGAATAAAATTATGTATGGT
TAGCATAAATAAGCATTGTACTATAAAACAGTATAAATCATGTATGGTTAGCATAAATAAGCAT
ACTTCACGCAGCTTTTTTTCAATCAGATGGAGATCTTTGGTGATACCAGTTTGAGTGGGTACAT
TAGAATTGCAGGAGAAAAGGTTTCTGGAACACATCTTACAAATGTACAAAATTGCATCACTTAC
TGAAAAAGCTGTGAGAGGTGTCCACTATAAAAGGTGAACAAAGTATTAGGTATTTGTTCTACAT
AATAATAGAAAGAAAGCATTGTATGAACAAATTCTGAAAGCATGTTCTTGCCATATTACAAACC
GCAATTGATACAGAACGCATTTGACTTTTGTAAAGATAAAGTATAAATTTAATCAGATATTTCT
TCCTAAAACATTACTTTCAAAAATGAAAACATTAGAAAGCACTGTGCGCATCAAAGATCCATCC
TAAACACTGTCAAAACTTATCAGTTTCTGAACCAGACATAAAAAAGGAAGGTGCAATCACATGT
TTTGAGGTTCTCAAAACATGTCAGAAAATTATATAATAATTATTATAAAATATAAAGTCCTTAC
TGTGAAATATCAACTTCTGAAGCTGCGTCATTTGGGAGGTCAATGATGCCAGCAAGACCTGCAC
ATAGACATATATTTGAAATTGAGCAGGTATACATGCCAAAGTCGCACAATCCACTTTTCTCATA
TTACTCTATGATAACAGATTTAAACAGCTCCCCTGTTCCCTACGGTAATAGATATCACAAAAAG
GTTTAATAAGATGTCTACAACGACACATTTGCTTATACAACCAGGCAATGTTTTTTTTTACTTG
AGAACATGTTGCATTGAATATTACAAGGTTATTAATACCATTTTATGTAAAAAACAGTTGTCTT
TTACAGCAAAAGATAACTAACTTTAGTGAAAAACAATTGTTGCATCTTGCCCAGTCAATTATAT
ATTTTTGCTGTATCCTATAGCAGCTATTTCAACATTAACGTTTAAATAATAGCAGCCATTGCAT
GTTTATGTTTGGCACAAATTATAGCATATGTAAAGTAGCTAGTGGTCACCTTGGCGAATAGAGT
GGTTAAGCTTTTTGGAATCAGACACTCCTCCATTGCTTTCTTCCCTAAGTGACCGAGTACGCTG
ACCATTCTTTCGGTATGAGGGTCTTGATGACCCAGATGATACAAATGCAGTGCCAGCTGACTTT
TTCTGGTGACGAGGAGGTGCCTGGGCACCAACTCCCAATGTCGCCACATGTGTGGATGTCATTG
TTGTCCTGCTGACCAAACAGTAGAATTGCACGGTTTCTCAAATGTGTAGTGCCATACAAAGAGA
AGATAAATCCCCAGATGTGTGAAAT
Conservation Information
Conserved circRNAs osa_circ_027285
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021