Detail information of Zm00001d009870_circ_g.1


General Information
CircRNA Name Zm00001d009870_circ_g.1
ID in PlantcircBase zma_circ_005659
Alias seedling_test_circ_001481
Organism Zea mays
Position chr8: 86257137-86259328  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d009870
Parent gene annotation Elongation factor 1-alpha
Parent gene strand +
Alternative splicing Zm00001d009870_circ_g.2
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered Zm00001d009870_T010:3
Zm00001d009870_T012:2
Zm00001d009870_T003:2
Zm00001d009870_T008:2
Zm00001d009870_T013:1
Zm00001d009870_T011:3
Zm00001d009870_T002:4
Zm00001d009870_T001:3
Zm00001d009870_T006:1
Zm00001d009870_T007:2
Zm00001d009870_T004:3
Zm00001d009870_T009:3
Zm00001d009870_T005:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGAGGGCGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAAGGCCCGACCCTGC
TTGAGGCTCTTGACCAGATCACCGAGCCCAAGAGACccttcctccccaactcgccgtcgtcttc
tgcggttctgccgtctacgcctccaatttggcctctctcccttgcaaggtattggctcatcctc
tgccactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCCTCCCCAACTCGCCGTCGTCTTCTGCGGTTCTGCCGTCTACGCCTCCAATTTGGCCTCT
CTCCCTTGCAAGGTATTGGCTCATCCTCTGCCACTCGACCTCTGTTCTAGATCTGCTTGATGCG
ATAGCGATTGGATCAAAGTTGTACTCTACTGCCTGCCCGTGCCTGTAGTGATTAAGTCCTTTGT
TTTGCGAGCAATTGTAGCTATTGCACGTCCATTCCGTTAGGGATTTTGGGTTTTGTTTACTTCC
GTGTTTTGATAACCTGATTCTTGCGGATTGTTTCTTCTGGATCCGACGAATTACTTACGCACCG
TCGTTGGACGACTTATTGATTGTGCTTGCGGTAATTTTACGTGGTCATAATAAAGTGTCAGATC
GAATTTTTTTATGTGTAGAGCAGCTGTAGTTTCTGTTTTGCAGATACTTTCCTCTGTATCCGTC
TTCGTAGTTCATGTACAGTAAGAGTTGCAACCTCATAATATGACCAAATTTCTGATCTGGTTTT
TATAGTATGTCCAATTTTTACTGGCTCAACATTCTATGCGCACACTTACTAGTTTGCTCTTTTT
ATGTTTTCTAGGCCTGCTTTGTTTTTATATTATATTGTTTGCTCTGTTCATTGTTTGCTGCTTT
ATTTTCCCGTGCTTATGTGTATGATGCTTTTTCTAAAGCTGATTGTTTTGTTAGTGGGGGGGGG
GGGGTTTGTTTACTAGTGTTTCTAATTATTGATTCGTCTGTCTTAACAGTTTAAGCTTCACCTT
CAACCATGGGTAAGGAGAAGTCCCACATCAACATTGTGGTCATTGGCCACGTCGACTCTGGCAA
GTCGACCACCACCGGCCACCTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTAATAGAGAGG
TTTGAGAAGGAGGCTGCTGAGATGAACAAGCGGTCCTTCAAGTATGCTTGGGTGCTCGACAAGC
TCAAGGCTGAGCGTGAGAGGGGTATCACCATTGATATTGCTCTGTGGAAGTTTGAGACCACCAA
GTATTACTGCACCGTCATTGATGCCCCTGGACACCGTGACTTCATCAAGAACATGATCACTGGT
ACCTCCCAGGCTGACTGTGCTGTCCTTATCATTGACTCCACCACTGGTGGTTTTGAGGCTGGTA
TCTCCAAGGATGGCCAGACCCGTGAGCATGCTCTCCTTGCGTTCACTCTTGGAGTGAAGCAGAT
GATTTGCTGCTGCAACAAGGTATGCTCTCAGGAATTTCTATTTTACTTTTCACTAGTTGAGACT
CTAGTATAATGGTATATGAGATGTATACACTATTTTTAGTTGAATGTAGAATTTGTGAATTGCA
ATTAGTGGCTAGAGCTTCCATTAACCTTCTGTTTCTTTTGATATTTAGTAGTTAATTAACTTAA
TAGCCTTCAATATTGCTAGTCAGATCTGTTGCAGAAAGATTTTCTCTATAATTTTGATATAAAT
TTCCCACTCAATTGTTCTGAGTAATGTTTATAAGTTATTGGAACACTTAGTGGATAAGTAATGC
ATGTGCAAGTGTAGCAGCATTTAGTTGTCTTCATTTGATTCCTATGGTTACTTAACGTGCTGAT
GGTACAGTTCAGTAGTAGGATCCATTGACATATACCTTGTCAGCTCTGTATTTACCTTCTTTGC
ATTTGTTACATCCAGGACTTGCTATGTTGGTTACATATATATGAATTATGATATGTGGTGATCT
ACCTATTTATGTGTTAGTTCTTACAGCTGGGATGTCAGTGTAAACAACTTTATTCCTGTGCACC
ATACTACCAGTCAGTTAATTTTGATCTATGTGTTTTAACATATTTACAGTTTGCCTGCTGTTCA
TGTGATTTATTCCATTAAACTAATAGTATTGTTCTGTTTCAAGCATACACTGTCTTTGTGACAT
GGATAATCAAACTAATGGTAATGCTATTCTGTTGCTGTTCTGTTTTTAGATGGATGCAACGACT
CCCAAATACTCCAAGGCGCGTTATGATGAGATTGTGAAGGAAGTCTCATCCTACCTCAAGAAAG
TTGGGTACAACCCTGATAAGATTGCCTTTGTCCCCATCTCTGGTTTTGAGGGCGACAACATGAT
TGAGAGGTCCACCAACCTTGACTGGTACAAAGGCCCGACCCTGCTTGAGGCTCTTGACCAGATC
ACCGAGCCCAAGAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.033797134
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018