Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0393900_circ_g.2 |
ID in PlantcircBase | osa_circ_023636 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 19366782-19367593 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0393900 |
Parent gene annotation |
Similar to H0718E12.2 protein. (Os04t0393900-01) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os04t0393900-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014301 |
PMCS | 0.190984729 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19367529-19366808(+) 19367474-19367590(+) 19366925-19367585(-) |
Potential amino acid sequence |
MEINAFLCTSTCPSDHWKIICMGLGGEAMPP*(+) MLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHGARGRGNATVKKELSALKDANGNV ISAQTFTFRQLAAATRNFREECFIGEGGFGRVYKGRLDGTGQIVAIKQLNRDGTQGNKEFLVEV LMLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHGARGRGNATVKKELSALKDANGN VISAQTFTFRQLAAATRNFREECFIGEGGFGRVYKGRLDGTGQIVAIKQLNRDGTQGNKEFLVE VLMLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHGARGRGNATVKKELSALKDANG NVISAQTFTFRQLAAATRNFREECFIGEGGFGRVYKGRLDGTGQIVAIKQLNRDGTQGNKEFLV EVLMLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLH(+) MKHSSLKFLVAAASWRKVNVCAEMTLPLASLRAESSFFTVALPLPLAPCK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |