Detail information of Os04g0393900_circ_g.2


General Information
CircRNA Name Os04g0393900_circ_g.2
ID in PlantcircBase osa_circ_023636
Alias NA
Organism Oryza sativa
Position chr4: 19366782-19367593  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0393900
Parent gene annotation Similar to H0718E12.2 protein. (Os04t0393900-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0393900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAACCTTGTTAATTTGGTTGGTTATTGCGCCGATGGAGATCAACGCCTTCTTGTGTACGAGT
ACATGCCCCTCGGATCATTGGAAGATCATTTGCATGgggctagggggagaggcaatgccaccgt
gaagaaggagctctcggctctcaaggatgccaatggcaatgtcatctccgcgcagacgttcacc
ttccgcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGCTAGGGGGAGAGGCAATGCCACCGTGAAGAAGGAGCTCTCGGCTCTCAAGGATGCCAATGG
CAATGTCATCTCCGCGCAGACGTTCACCTTCCGCCAGCTCGCCGCGGCGACGAGGAACTTCAGG
GAGGAGTGCTTCATTGGGGAAGGAGGGTTTGGGCGCGTTTACAAGGGCCGGTTGGACGGCACTG
GCCAGGTAAAAACTCATCTTTTTTTATTTATTTATTTTTGTTGGCTCTGACGCTTTCTTGCTAA
ATTGCTGTAGAGGTAGTGGTACTGAATTTGCTTGGTTGTACCGAAACACGTCATTGATTTGTCT
AGGACATTCAAGAAAATCAGTGTTTGCACTTGAGTGAGAGGGATCCCCACAAGGGAAAAAAAAG
TCCATGCCGTTCAATCATACTAGCAGATCCAATTTATGTTGGCCTCAATTGTGAATAGTGTTTA
AACTGTTCATAGGCCCTTCTGTTCATTGAAATTGAATTGAACAAGATGGATCACATGAAACAGC
TGATGCATGCCCTTTTTTAATTTAATATTAAATATTATAAATCAGAATTCACAAAATTATGAGA
TTAGGTGCAGCACTTAGCTGAAAACTTTGATGCATCCCTTCTGCAGATTGTTGCTATAAAACAG
CTCAATAGGGATGGTACTCAAGGAAACAAAGAATTTCTAGTGGAGGTTCTCATGCTTAGTTTGC
TGCATCATCAAAACCTTGTTAATTTGGTTGGTTATTGCGCCGATGGAGATCAACGCCTTCTTGT
GTACGAGTACATGCCCCTCGGATCATTGGAAGATCATTTGCATG
Conservation Information
Conserved circRNAs osi_circ_014301
PMCS 0.190984729
Functional Information
Coding potential Y
Potential coding position 19367529-19366808(+)
19367474-19367590(+)
19366925-19367585(-)
Potential amino acid sequence MEINAFLCTSTCPSDHWKIICMGLGGEAMPP*(+)
MLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHGARGRGNATVKKELSALKDANGNV
ISAQTFTFRQLAAATRNFREECFIGEGGFGRVYKGRLDGTGQIVAIKQLNRDGTQGNKEFLVEV
LMLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHGARGRGNATVKKELSALKDANGN
VISAQTFTFRQLAAATRNFREECFIGEGGFGRVYKGRLDGTGQIVAIKQLNRDGTQGNKEFLVE
VLMLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHGARGRGNATVKKELSALKDANG
NVISAQTFTFRQLAAATRNFREECFIGEGGFGRVYKGRLDGTGQIVAIKQLNRDGTQGNKEFLV
EVLMLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLH(+)
MKHSSLKFLVAAASWRKVNVCAEMTLPLASLRAESSFFTVALPLPLAPCK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017