Detail information of BGIOSGA016643_circ_g.1


General Information
CircRNA Name BGIOSGA016643_circ_g.1
ID in PlantcircBase osi_circ_014477
Alias Chr04:24881116_24881304(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22801740-22801928  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016643
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016643_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA016643-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCAGTCAGGTATGGACTCAGAGTATGAAGTGCGCCGGTCTGAAACACCAGAACCAGTGAAGC
CACCGCACAGATGTATAAATATGCTTCAAGggttgggtgctgatgagaatgaggatttggaagt
tgataaagatgattatatggacgttgacagagatgatgatggtaacagtgatattgcaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGGGTGCTGATGAGAATGAGGATTTGGAAGTTGATAAAGATGATTATATGGACGTTGACAG
AGATGATGATGGTAACAGTGATATTGCAAATCATCAGTCAGGTATGGACTCAGAGTATGAAGTG
CGCCGGTCTGAAACACCAGAACCAGTGAAGCCACCGCACAGATGTATAAATATGCTTCAAG
Conservation Information
Conserved circRNAs osa_circ_024304
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021