Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Chr6_circ_ig.123 |
ID in PlantcircBase | csa_circ_004236 |
Alias | Chr6:26767517_26767972 |
Organism | Cucumis sativus |
Position | chrChr6: 26767517-26767972 JBrowse» |
Reference genome | Cucumis sativus v1.5 |
Type | ig-circRNA |
Identification method | Find_circ |
Parent gene | NA |
Parent gene annotation | NA |
Parent gene strand | NA |
Alternative splicing | Chr6_circ_ig.116 Chr6_circ_ig.117 Chr6_circ_ig.118 Chr6_circ_ig.119 Chr6_circ_ig.120 Chr6_circ_ig.121 Chr6_circ_ig.122 Chr6_circ_ig.124 Chr6_circ_ig.125 Chr6_circ_ig.126 |
Support reads | NA |
Tissues | leaf |
Exon boundary | NA-NA |
Splicing signals | CT-AC |
Number of exons covered | NA |
Conservation Information | |
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Conserved circRNAs |
osa_circ_013251* osa_circ_013232* osa_circ_013252* osa_circ_013248* osa_circ_013234 osa_circ_013225 osa_circ_013224 |
PMCS | 1.820938871 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | He et al., 2020 |