Detail information of AT3G54280_circ_g.5


General Information
CircRNA Name AT3G54280_circ_g.5
ID in PlantcircBase ath_circ_027433
Alias NA
Organism Arabidpsis thaliana
Position chr3: 20096719-20099096  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT3G54280
Parent gene annotation ROOT GROWTH DEFECTIVE 3
Parent gene strand +
Alternative splicing AT3G54280_circ_g.3 AT3G54280_circ_g.4 AT3G54280_circ_g.6 AT3G54280_circ_g.7 AT3G54280_circ_g.8 AT3G54280_circ_g.9
Support reads 2
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G54280.2:6
AT3G54280.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTGCTGGAAATGAATCCTTAGAAAAGCAAGTTTTTGAAGACGTGGAGTCATCTAGGCAACAG
CTATTAAGTACTGCTGGTTATTTAAAGTGTGTCCAGcgccggcctgaatgggaaattcgtcatg
gaagtcttttaggcatcaagtacttggttgctgtgcgacaggtaatattccagcacataagagc
tgattaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCCGGCCTGAATGGGAAATTCGTCATGGAAGTCTTTTAGGCATCAAGTACTTGGTTGCTGTGC
GACAGGTAATATTCCAGCACATAAGAGCTGATTACACATGTTTGGAAAACTGAAAAAGGACACT
TTCACTGTCTTGTTTTGCCGTTTTCTTATGTCTTGAGAACTTATGCTTTTCTATCATGATATGT
AGTAGTTTTTGATTTTCTGAGGCTCTATTTAGCTTATTTGACTTCTTGATATGTTCTTGGTTTG
TAGAGATGCATTTCCAGTGTTAGCTTTTCTTTCTTATTCTCCCCGTTTTTTGCAGGAAATGCTC
CAAGATTTGCTTGGCTATATTCTTCCGGCGTGTAAAGCAGGGTTGGAGGATTCTGACGATGATG
TGCGAGCAGTTGCCGCTGATGCTCTTATACCGGCAGCAGCTGCTATTGTCTCTTTGAGAGGACA
GACATTACTTTCCATTGTCATGCTACTGTGGGATATCTTACTTGAGTTGGATGACTTAAGTCCA
TCAACAAGCAGGTAAACAAGTGTAAAATTACATGCTAACCTTTTCATTATCCAAAATCCTTCTT
TTCTTGGTATTTGGAGTTTTCTGTACGAGATCAATTTTGACCTAGTGAAATATTTCTTGCAGTA
TTATGAACCTCCTGGCAGAAATTTATTCTCAAGATGACATGACCCTAGTGATGCATGAGGAATT
ATCACTGGGGGAGGAACAAAATATTGAACTCAATGAAATGGGTCATATCGAGAGTATTGGAGAA
AGAAGAGATGTAAAGGAAAGCCCTTATGCATTATCAGGTTTGGCCCCTAGGTTGTGGCCATTCA
CGAGGCATGACATAACATCAGTTCGATTTTCTGCTATTCGAACTCTGGTGGGTTTCTGTTGTTT
ATTCTACAAAAGAATCTCTCTCAGTACTTGCTTCCTATGTTTGTAGCCGCTTACATGTATCTTG
TGCCTTGAGTTTCTATGCCCTCAGAATTTAACAGATGCAAACCCTGTTTGTTTACCTCAGAATA
CACTTTACTTATGTTTCTTCATATGTTTATAGTGTGCTTTCCTAAATTTTCCCCTGGCAGGAAC
GACTTCTTGAAGCTGGATGCAGAAAAAACATTTCTGGGCAGTCTAAAAGTTCTTTTTGGCCATC
TTCTATTTTAGGGGACACCCTGAGAATCGTCTTTCAAAATCTTTTGCTTGAATCAACTGAGGAG
ATTCTGGAGTGTTCAGAGAGAGTGTGGAGACTATTGGTTCAGGTACTTAGTAATAAAATTTTGC
TTTTCTTTGAAACACCTAAATTATTTCTATGCCTTTTTCTCCTTCTTCTGCATCCTTAGAAATT
AAAGGATCTTCGTTCTTGGTTTCCAGTTTGCATTCTTACTTGGGCCTAGATTATCTCTCATTTC
TCTTCTTTTTTAGTGCCCAGTGGATGATCTAGAAGACACGGCAAAATTCTATATGGCTTCGTGG
ATAGAACTTGCAGCTACTCCTTATGGCTCCACATTGGATGCTACAAAAATGTTTTGGCCAGTAG
CTCCCCCTCGTAAGAGTCATTTCAAAGCTGCTGCTAAGATGAAAGCTGTCAAACTTGAGAACGA
AGCTTCTAGCATTCTGGGATTTGATTATGCAAGAAGTTCTGCTTCCCTTGAAAAACAGGAAGAT
GCTTCTGCCAGGTCCACTAAAATTATTGTCGGCTCTGATATGGAGATGTCAGTGACCCGTACCC
GGGTAGTTACAGCATCTGCATTAGGTATCTTTGCATCCCGGTTGCGAGAGGGTTCAATGCAGTT
TGTGGTAGATCCACTGAGTAGTACTCTTACTTCTATGTCCGGTGTTCAGCGCCAGGTATGCATC
TCTCTATCTCAATATCTCGTTTTCTCTCTATTACTAGACATCTGTTGCGTTTTTCGAACTAAAC
CGCTGGCTCTGCAGGTTGGGTCCATTGTGCTCATCTCTTGGTTCAGAGAAACTAAATGCAAGGC
CCCTTCTGATGGAAGTGGAAGTTTGCCTGGTTTCCCTAGTCCTCTGAAAAAATGGCTGCTAGAT
TTGTTAGCTTGCGCAGACCCTGCTTTCCCTACTAAAGACATATTTCTTCCTTATGCTGAACTCT
CAAGAACATACACTAAAATGAGGAATGAAGCTTCTCAGTTGTTGCATACAGTTGAAACCTGCCA
TTGTTTTGATAAGTTATTATCAACGAATAAACTCAATGTGGAGAGCGTGACTGCTGATGAGACA
ATTGACTTTGCATCAACACTAGATTTGTGGAACAAAGAAAGTGCTGGAAATGAATCCTTAGAAA
AGCAAGTTTTTGAAGACGTGGAGTCATCTAGGCAACAGCTATTAAGTACTGCTGGTTATTTAAA
GTGTGTCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.12676237
Functional Information
Coding potential Y
Potential coding position 20097033-20099093(+)
Potential amino acid sequence MLQDLLGYILPACKAGLEDSDDDVRAVAADALIPAAAAIVSLRGQTLLSIVMLLWDILLELDDL
SPSTSSIMNLLAEIYSQDDMTLVMHEELSLGEEQNIELNEMGHIESIGERRDVKESPYALSGLA
PRLWPFTRHDITSVRFSAIRTLERLLEAGCRKNISGQSKSSFWPSSILGDTLRIVFQNLLLEST
EEILECSERVWRLLVQCPVDDLEDTAKFYMASWIELAATPYGSTLDATKMFWPVAPPRKSHFKA
AAKMKAVKLENEASSILGFDYARSSASLEKQEDASARSTKIIVGSDMEMSVTRTRVVTASALGI
FASRLREGSMQFVVDPLSSTLTSMSGVQRQVGSIVLISWFRETKCKAPSDGSGSLPGFPSPLKK
WLLDLLACADPAFPTKDIFLPYAELSRTYTKMRNEASQLLHTVETCHCFDKLLSTNKLNVESVT
ADETIDFASTLDLWNKESAGNESLEKQVFEDVESSRQQLLSTAGYLKCVQRRPEWEIRHGSLLG
IKYLVAVRQEMLQDLLGYILPACKAGLEDSDDDVRAVAADALIPAAAAIVSLRGQTLLSIVMLL
WDILLELDDLSPSTSSIMNLLAEIYSQDDMTLVMHEELSLGEEQNIELNEMGHIESIGERRDVK
ESPYALSGLAPRLWPFTRHDITSVRFSAIRTLERLLEAGCRKNISGQSKSSFWPSSILGDTLRI
VFQNLLLESTEEILECSERVWRLLVQCPVDDLEDTAKFYMASWIELAATPYGSTLDATKMFWPV
APPRKSHFKAAAKMKAVKLENEASSILGFDYARSSASLEKQEDASARSTKIIVGSDMEMSVTRT
RVVTASALGIFASRLREGSMQFVVDPLSSTLTSMSGVQRQVGSIVLISWFRETKCKAPSDGSGS
LPGFPSPLKKWLLDLLACADPAFPTKDIFLPYAELSRTYTKMRNEASQLLHTVETCHCFDKLLS
TNKLNVESVTADETIDFASTLDLWNKESAGNESLEKQVFEDVESSRQQLLSTAGYLKCVQRRPE
WEIRHGSLLGIKYLVAVRQEMLQDLLGYILPACKAGLEDSDDDVRAVAADALIPAAAAIVSLRG
QTLLSIVMLLWDILLELDDLSPSTSSIMNLLAEIYSQDDMTLVMHEELSLGEEQNIELNEMGHI
ESIGERRDVKESPYALSGLAPRLWPFTRHDITSVRFSAIRTLERLLEAGCRKNISGQSKSSFWP
SSILGDTLRIVFQNLLLESTEEILECSERVWRLLVQCPVDDLEDTAKFYMASWIELAATPYGST
LDATKMFWPVAPPRKSHFKAAAKMKAVKLENEASSILGFDYARSSASLEKQEDASARSTKIIVG
SDMEMSVTRTRVVTASALGIFASRLREGSMQFVVDPLSSTLTSMSGVQRQVGSIVLISWFRETK
CKAPSDGSGSLPGFPSPLKKWLLDLLACADPAFPTKDIFLPYAELSRTYTKMRNEASQLLHTVE
TCHCFDKLLSTNKLNVESVTADETIDFASTLDLWNKESAGNESLEKQVFEDVESSRQQLLSTAG
YLKCVQRRPEWEIRHGSLLGIKYLVAVRQEMLQDLLGYILPACKAGLEDSDDDVRAVAADALIP
AAAAIVSLRGQTLLSIVMLLWDILLELDDLSPSTSSIMNLLAEIYSQDDMTLVMHEELSLGEEQ
NIELNEMGHIESIGERRDVKESPYALSGLAPRLWPFTRHDITSVRFSAIRTLERLLEAGCRKNI
SGQSKSSFWPSSILGDTLRIVFQNLLLESTEEILECSERVWRLLVQCPVDDLEDTAKFYMASWI
ELAATPYGSTLDATKMFWPVAPPRKSHFKAAAKMKAVKLENEASSILGFDYARSSASLEKQEDA
SARSTKIIVGSDMEMSVTRTRVVTASALGIFASRLREGSMQFVVDPLSSTLTSMSGVQRQVGSI
VLISWFRETKCKAPSDGSGSLPGFPSPLKKWLLDLLACADPAFPTKDIFLPYAELSRTYTKMRN
EASQLLHTVETCHCFDKLLSTNKLNVESVTADETIDFASTLDLWNKESAGNESLEKQVFEDVES
SRQQLLSTAGYLKCVQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017