Detail information of Zm00001d035034_circ_g.3


General Information
CircRNA Name Zm00001d035034_circ_g.3
ID in PlantcircBase zma_circ_005139
Alias cold_test_circ_000032
Organism Zea mays
Position chr6: 2463253-2463350  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d035034
Parent gene annotation adenylate kinase1
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered Zm00001d035034_T001:1
Zm00001d035034_T002:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAGCAGCTCGTCGATCTTAGCAAAGACAGCATCCACTGTGGCATCTCccttgctcatgtgct
ggaaaccatttcatttttcttctccaggatagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGCTCATGTGCTGGAAACCATTTCATTTTTCTTCTCCAGGATAGAACCCAGCAGCTCGTCG
ATCTTAGCAAAGACAGCATCCACTGTGGCATCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.118197279
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018