Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G12800_circ_g.3 |
ID in PlantcircBase | ath_circ_002294 |
Alias | At_ciR3503, Ath_circ_FC0328 |
Organism | Arabidpsis thaliana |
Position | chr1: 4362357-4363063 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G12800 |
Parent gene annotation |
Nucleic acid-binding, OB-fold-like protein |
Parent gene strand | - |
Alternative splicing | AT1G12800_circ_g.2 AT1G12800_circ_g.4 AT1G12800_circ_g.5 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G12800.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.183440794 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4363043-4362359(-) |
Potential amino acid sequence |
MANRNSRKLIFSMRPRENEEEVEKKRTLMAKLRVGDVVKCCIKKITYFGIFCELEGVPALVHQS EVSWDATLDPASYFKIGQIVEAKVHQLDFALERIFLSLKEITPDPLTEALESVVGGDNDQLGGR LQAAELDAEKIKVNVVMANRNSRKLIFSMRPRENEEEVEKKRTLMAKLRVGDVVKCCIKKITYF GIFCELEGVPALVHQSEVSWDATLDPASYFKIGQIVEAKVHQLDFALERIFLSLKEITPDPLTE ALESVVGGDNDQLGGRLQAAELDAEKIKVNVVMANRNSRKLIFSMRPRENEEEVEKKRTLMAKL RVGDVVKCCIKKITYFGIFCELEGVPALVHQSEVSWDATLDPASYFKIGQIVEAKVHQLDFALE RIFLSLKEITPDPLTEALESVVGGDNDQLGGRLQAAELDAEKIKVNVVMANRNSRKLIFSMRPR ENEEEVEKKRTLMAKLRVGDVVKCCIKKITYFGIFCELEGVPALVHQSEVSWDATLDPASYFKI GQIVEAKVHQLDFALERIFLSLKEITPDPLTEALESVVGGDNDQLGGRLQAAELDAE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chen et al., 2017a |