| CircRNA Name |
AT4G39540_circ_g.7 |
| ID in PlantcircBase |
ath_circ_035715 |
| Alias |
NA |
| Organism |
Arabidpsis thaliana |
| Position |
chr4: 18379334-18380097 JBrowse» |
| Reference genome |
TAIR10.38 |
| Type |
e-circRNA
|
| Identification method |
CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, find_circ |
| Parent gene |
AT4G39540 |
| Parent gene annotation |
Shikimate kinase 2
|
| Parent gene strand |
+ |
| Alternative splicing |
AT4G39540_circ_g.3 AT4G39540_circ_g.4 AT4G39540_circ_g.5 AT4G39540_circ_g.6 AT4G39540_circ_g.8 |
| Support reads |
3 |
| Tissues |
root, inflorescences, whole_plant |
| Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
| Splicing signals |
GT-AG
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
| Number of exons covered |
AT4G39540.3:5
AT4G39540.1:5
AT4G39540.2:5
|
