Detail information of Os06g0178900_circ_g.1


General Information
CircRNA Name Os06g0178900_circ_g.1
ID in PlantcircBase osa_circ_042268
Alias NA
Organism Oryza sativa
Position chr6: 3919761-3919856  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0178900
Parent gene annotation Vacuolar H+-pyrophosphatase (EC 3.6.1.1) (Ovp2). (Os06t0178900-0
1)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AC
Number of exons covered Os06t0178950-00:1
Os06t0178950-00:1
Os06t0178900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTACCTCATCGAGGAGGAGGAGGGGCTCAACGACCACAACGTCGTCgcggcggcggccgcgg
cgtcgggggggagcaagaacggcgggtacggg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 96
Transcript exons: 3919761-3919856
GCGGCGGCGGCCGCGGCGTCGGGGGGGAGCAAGAACGGCGGGTACGGGGACTACCTCATCGAGG
AGGAGGAGGGGCTCAACGACCACAACGTCGTC

Genomic sequence GCGGCGGCGGCCGCGGCGTCGGGGGGGAGCAAGAACGGCGGGTACGGGGACTACCTCATCGAGG
AGGAGGAGGGGCTCAACGACCACAACGTCGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.309692535
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study