Detail information of Os01g0835600_circ_g.5


General Information
CircRNA Name Os01g0835600_circ_g.5
ID in PlantcircBase osa_circ_004752
Alias Os_ciR6252
Organism Oryza sativa
Position chr1: 35817939-35818094  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0835600
Parent gene annotation AT hook, DNA-binding, conserved site domain containing protein.
(Os01t0835600-01);AT hook, DNA-binding, conserved site domain co
ntaining protein. (Os01t0835600-02);AT hook, DNA-binding, conser
ved site domain containing protein. (Os01t0835600-03);AT hook, D
NA-binding, conserved site domain containing protein. (Os01t0835
600-05)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0835600-02:1
Os01t0835600-01:1
Os01t0835600-05:1
Os01t0835600-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTGCCGCTCCAGTCATCATCTGATCTTCCATAGCATTGTTTGTGTTGCCATCCGTTATAGC
ATAGACTTTTCTTGgttgactactagcgttaacatatgcatcgttggatgtagatgctggaacc
aacgctagtaagttattggattgatgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGACTACTAGCGTTAACATATGCATCGTTGGATGTAGATGCTGGAACCAACGCTAGTAAGTT
ATTGGATTGATGTTCATTTGCCGCTCCAGTCATCATCTGATCTTCCATAGCATTGTTTGTGTTG
CCATCCGTTATAGCATAGACTTTTCTTG
Conservation Information
Conserved circRNAs osi_circ_002517*
PMCS 0.136752137
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015