Detail information of BGIOSGA011026_circ_g.2


General Information
CircRNA Name BGIOSGA011026_circ_g.2
ID in PlantcircBase osi_circ_004709
Alias 3:9634979|9635143
Organism Oryza sativa ssp. indica
Position chr3: 9634979-9635143  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA011026
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA011026_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA011026-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTCCACAGCTCCTTCATGAACTTCACTGTGTTCTTCTCCATGAATCCTGTCAGCTGTATCTG
TATCTTCTTTCCATCCGCctttttctgctgaatctcagcttcctttgcatctaaaaactgttgg
ggcaccccactagcattctgttgtgcactgagtagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTCTGCTGAATCTCAGCTTCCTTTGCATCTAAAAACTGTTGGGGCACCCCACTAGCATTC
TGTTGTGCACTGAGTAGGAGGCTCCACAGCTCCTTCATGAACTTCACTGTGTTCTTCTCCATGA
ATCCTGTCAGCTGTATCTGTATCTTCTTTCCATCCGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021