Plant Circular RNA Database

Detail information of Os05g0106650_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os05g0106650_circ_g.2
					
						ID in PlantcircBase
						osa_circ_026188
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 354632-355971  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0106650						
					
						Parent gene annotation
						
							Hypothetical gene. (Os05t0106650-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0106600_circ_g.1 Os05g0106600_circ_g.2 Os05g0106600_circ_g.3 Os05g0106650_circ_g.1 Os05g0106650_circ_g.3 Os05g0106650_circ_g.4 Os05g0106650_circ_g.5 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0106600-01:2
Os05t0106600-02:2
Os05t0106600-01:2
Os05t0106600-02:2
Os05t0106650-00:2

General Information
CircRNA Name	Os05g0106650_circ_g.2
ID in PlantcircBase	osa_circ_026188
Alias	NA
Organism	Oryza sativa
Position	chr5: 354632-355971 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0106650
Parent gene annotation	Hypothetical gene. (Os05t0106650-00)
Parent gene strand	+
Alternative splicing	Os05g0106600_circ_g.1 Os05g0106600_circ_g.2 Os05g0106600_circ_g.3 Os05g0106650_circ_g.1 Os05g0106650_circ_g.3 Os05g0106650_circ_g.4 Os05g0106650_circ_g.5
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0106600-01:2 Os05t0106600-02:2 Os05t0106600-01:2 Os05t0106600-02:2 Os05t0106650-00:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATCCTTCTGCCCCATTCCTACCATAACACCGGTGTGGCGAGGACGGCCAACAATACTAGGGAA
CACGGCCCTTGGTGCATCATCCCCAGCGAAACCAGCctgttggaaagtgctgagtgaggctagg
atcgaccctccgatccagacgctgtacttgcgctcaggtggagcaacgaccttaatcttcatgc
tgctcggg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1008
Transcript exons: 354632-355245,355578-355971
CTGTTGGAAAGTGCTGAGTGAGGCTAGGATCGACCCTCCGATCCAGACGCTGTACTTGCGCTCA
GGTGGAGCAACGACCTTAATCTTCATGCTGCTCGGGGCAAGGGCAGTGATCTCCTTGCTCATAC
GATCAGCAATGCCTGGGAACATGGTTGTACCACCACTGAGCACAATGTTGCCATAAAGGTCCTT
CCTGATATCCACGTCGCACTTCATGATGGAGTTGTAGGTGGTCTCGTGAATACCAGCAGCCTCC
ATACCGATCATGGATGGCTGGAAGAGGACCTCGGGGCACCTGAACCTCTCTGCACCAATTGTGA
TTACTTGACCATCAGGTAGCTCATAACTCTTTTCAACTGAGGAGCTGTTCTTGGCGGTTTCCAA
CTCTTGCTCATAATCAAGGGCAACATACGCAAGTTTCTCCTTGATGTCCCTTACAATTTCCCGC
TCAGCGGAGGTTGTGAAGGAGTAACCCCTCTCAGTCAGAATCTTCATAAGGGAGTCTGTGAGGT
CACGACCAGCCAGATCCAAACGGAGAATGGCATGAGGAAGCGCATATCCTTCATAAATGGGCAC
TGTGTGGCTGACACCATCACCAGAATCAAGAACAATACCAGTAGTACGGCCACTGGCATAGAGG
GAAAGCACGGCCTGGATAGCGACGTACATTGCAGGGACATTGAAAGTCTCAAACATAATCTGGG
TCATCTTCTCTCTGTTGGCTTTAGGGTTCAGAGGAGCTTCAGTGAGCAACACAGGGTGCTCCTC
GGGCGCCACACGAAGCTCATTGTAGAAAGTGTGATGCCAGATTTTCTCCATGTCATCCCAGTTG
CTCACGATACCGTGCTCGATGGGGTACTTGAGCGTGAGGATACCTCTCTTGGACTGTGCCTCAT
CACCAACATAGGCATCCTTCTGCCCCATTCCTACCATAACACCGGTGTGGCGAGGACGGCCAAC
AATACTAGGGAACACGGCCCTTGGTGCATCATCCCCAGCGAAACCAGC
						
					

						Genomic sequence
						
							CTGTTGGAAAGTGCTGAGTGAGGCTAGGATCGACCCTCCGATCCAGACGCTGTACTTGCGCTCA
GGTGGAGCAACGACCTTAATCTTCATGCTGCTCGGGGCAAGGGCAGTGATCTCCTTGCTCATAC
GATCAGCAATGCCTGGGAACATGGTTGTACCACCACTGAGCACAATGTTGCCATAAAGGTCCTT
CCTGATATCCACGTCGCACTTCATGATGGAGTTGTAGGTGGTCTCGTGAATACCAGCAGCCTCC
ATACCGATCATGGATGGCTGGAAGAGGACCTCGGGGCACCTGAACCTCTCTGCACCAATTGTGA
TTACTTGACCATCAGGTAGCTCATAACTCTTTTCAACTGAGGAGCTGTTCTTGGCGGTTTCCAA
CTCTTGCTCATAATCAAGGGCAACATACGCAAGTTTCTCCTTGATGTCCCTTACAATTTCCCGC
TCAGCGGAGGTTGTGAAGGAGTAACCCCTCTCAGTCAGAATCTTCATAAGGGAGTCTGTGAGGT
CACGACCAGCCAGATCCAAACGGAGAATGGCATGAGGAAGCGCATATCCTTCATAAATGGGCAC
TGTGTGGCTGACACCATCACCAGAATCAAGAACAATACCTGCAGAGCAGAGAAACATAAGCTCC
TCTAAATAAAACATTTACTTGTCGACAGTTAGCTGTTTGTTCAGGCCTGGACACAATGGGGTCG
CAGGTAGCTTGCTATCAAGATTGAAGTGTATCCAAATAAAACATTTATATCAAGATTGAAGTGT
ATCTAAAGGATGCTAGCAAATGAGCATATTAATAAAGATGGATGCAAATCATACATTAATTGTA
GAAGCTTGGCAATGATTAAAAAAAAGTGTATGGCAGCAGAGGTGGATCATACAAGTGCATAATT
GAGCAAACCCTCCTCATTGAAGTAAAAGACAGAGATGAGTTCATACATACCAGTAGTACGGCCA
CTGGCATAGAGGGAAAGCACGGCCTGGATAGCGACGTACATTGCAGGGACATTGAAAGTCTCAA
ACATAATCTGGGTCATCTTCTCTCTGTTGGCTTTAGGGTTCAGAGGAGCTTCAGTGAGCAACAC
AGGGTGCTCCTCGGGCGCCACACGAAGCTCATTGTAGAAAGTGTGATGCCAGATTTTCTCCATG
TCATCCCAGTTGCTCACGATACCGTGCTCGATGGGGTACTTGAGCGTGAGGATACCTCTCTTGG
ACTGTGCCTCATCACCAACATAGGCATCCTTCTGCCCCATTCCTACCATAACACCGGTGTGGCG
AGGACGGCCAACAATACTAGGGAACACGGCCCTTGGTGCATCATCCCCAGCGAAACCAGC
						
					

			
		

Sequences
Splice junction sequence	CATCCTTCTGCCCCATTCCTACCATAACACCGGTGTGGCGAGGACGGCCAACAATACTAGGGAA CACGGCCCTTGGTGCATCATCCCCAGCGAAACCAGCctgttggaaagtgctgagtgaggctagg atcgaccctccgatccagacgctgtacttgcgctcaggtggagcaacgaccttaatcttcatgc tgctcggg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1008 Transcript exons: 354632-355245,355578-355971 CTGTTGGAAAGTGCTGAGTGAGGCTAGGATCGACCCTCCGATCCAGACGCTGTACTTGCGCTCA GGTGGAGCAACGACCTTAATCTTCATGCTGCTCGGGGCAAGGGCAGTGATCTCCTTGCTCATAC GATCAGCAATGCCTGGGAACATGGTTGTACCACCACTGAGCACAATGTTGCCATAAAGGTCCTT CCTGATATCCACGTCGCACTTCATGATGGAGTTGTAGGTGGTCTCGTGAATACCAGCAGCCTCC ATACCGATCATGGATGGCTGGAAGAGGACCTCGGGGCACCTGAACCTCTCTGCACCAATTGTGA TTACTTGACCATCAGGTAGCTCATAACTCTTTTCAACTGAGGAGCTGTTCTTGGCGGTTTCCAA CTCTTGCTCATAATCAAGGGCAACATACGCAAGTTTCTCCTTGATGTCCCTTACAATTTCCCGC TCAGCGGAGGTTGTGAAGGAGTAACCCCTCTCAGTCAGAATCTTCATAAGGGAGTCTGTGAGGT CACGACCAGCCAGATCCAAACGGAGAATGGCATGAGGAAGCGCATATCCTTCATAAATGGGCAC TGTGTGGCTGACACCATCACCAGAATCAAGAACAATACCAGTAGTACGGCCACTGGCATAGAGG GAAAGCACGGCCTGGATAGCGACGTACATTGCAGGGACATTGAAAGTCTCAAACATAATCTGGG TCATCTTCTCTCTGTTGGCTTTAGGGTTCAGAGGAGCTTCAGTGAGCAACACAGGGTGCTCCTC GGGCGCCACACGAAGCTCATTGTAGAAAGTGTGATGCCAGATTTTCTCCATGTCATCCCAGTTG CTCACGATACCGTGCTCGATGGGGTACTTGAGCGTGAGGATACCTCTCTTGGACTGTGCCTCAT CACCAACATAGGCATCCTTCTGCCCCATTCCTACCATAACACCGGTGTGGCGAGGACGGCCAAC AATACTAGGGAACACGGCCCTTGGTGCATCATCCCCAGCGAAACCAGC
Genomic sequence	CTGTTGGAAAGTGCTGAGTGAGGCTAGGATCGACCCTCCGATCCAGACGCTGTACTTGCGCTCA GGTGGAGCAACGACCTTAATCTTCATGCTGCTCGGGGCAAGGGCAGTGATCTCCTTGCTCATAC GATCAGCAATGCCTGGGAACATGGTTGTACCACCACTGAGCACAATGTTGCCATAAAGGTCCTT CCTGATATCCACGTCGCACTTCATGATGGAGTTGTAGGTGGTCTCGTGAATACCAGCAGCCTCC ATACCGATCATGGATGGCTGGAAGAGGACCTCGGGGCACCTGAACCTCTCTGCACCAATTGTGA TTACTTGACCATCAGGTAGCTCATAACTCTTTTCAACTGAGGAGCTGTTCTTGGCGGTTTCCAA CTCTTGCTCATAATCAAGGGCAACATACGCAAGTTTCTCCTTGATGTCCCTTACAATTTCCCGC TCAGCGGAGGTTGTGAAGGAGTAACCCCTCTCAGTCAGAATCTTCATAAGGGAGTCTGTGAGGT CACGACCAGCCAGATCCAAACGGAGAATGGCATGAGGAAGCGCATATCCTTCATAAATGGGCAC TGTGTGGCTGACACCATCACCAGAATCAAGAACAATACCTGCAGAGCAGAGAAACATAAGCTCC TCTAAATAAAACATTTACTTGTCGACAGTTAGCTGTTTGTTCAGGCCTGGACACAATGGGGTCG CAGGTAGCTTGCTATCAAGATTGAAGTGTATCCAAATAAAACATTTATATCAAGATTGAAGTGT ATCTAAAGGATGCTAGCAAATGAGCATATTAATAAAGATGGATGCAAATCATACATTAATTGTA GAAGCTTGGCAATGATTAAAAAAAAGTGTATGGCAGCAGAGGTGGATCATACAAGTGCATAATT GAGCAAACCCTCCTCATTGAAGTAAAAGACAGAGATGAGTTCATACATACCAGTAGTACGGCCA CTGGCATAGAGGGAAAGCACGGCCTGGATAGCGACGTACATTGCAGGGACATTGAAAGTCTCAA ACATAATCTGGGTCATCTTCTCTCTGTTGGCTTTAGGGTTCAGAGGAGCTTCAGTGAGCAACAC AGGGTGCTCCTCGGGCGCCACACGAAGCTCATTGTAGAAAGTGTGATGCCAGATTTTCTCCATG TCATCCCAGTTGCTCACGATACCGTGCTCGATGGGGTACTTGAGCGTGAGGATACCTCTCTTGG ACTGTGCCTCATCACCAACATAGGCATCCTTCTGCCCCATTCCTACCATAACACCGGTGTGGCG AGGACGGCCAACAATACTAGGGAACACGGCCCTTGGTGCATCATCCCCAGCGAAACCAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005903* 						
					
						PMCS
						0.533653893

Conservation Information
Conserved circRNAs	osi_circ_005903*
PMCS	0.533653893

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							355176-354649(+)
355898-354634(-)
						
					

						Potential amino acid sequence
						
							MRKRISFINGHCVADTITRIKNNTSSTATGIEGKHGLDSDVHCRDIESLKHNLGHLLSVGFRVQ
RSFSEQHRVLLGRHTKLIVESVMPDFLHVIPVAHDTVLDGVLEREDTSLGLCLITNIGILLPHS
YHNTGVARTANNTREHGPWCIIPSETSLLESAE*(+)
MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
APLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL
PHAILRLDLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKNSSS
VEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVL
SGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQAGFAGDDAP
RAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFY
NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDS
GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYV
ALDYEQELETAKNSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIM
KCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA
SLSTFQQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI
VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV
LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTS
AEREIVRDIKEKLAYVALDYEQELETAKNSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMI
GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVA
PPERKYSVWIGGSILASLSTFQQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ
SKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD
SLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKNSSSVEKSYELPDGQVITIG
AERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSK
EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	355176-354649(+) 355898-354634(-)
Potential amino acid sequence	MRKRISFINGHCVADTITRIKNNTSSTATGIEGKHGLDSDVHCRDIESLKHNLGHLLSVGFRVQ RSFSEQHRVLLGRHTKLIVESVMPDFLHVIPVAHDTVLDGVLEREDTSLGLCLITNIGILLPHS YHNTGVARTANNTREHGPWCIIPSETSLLESAE*(+) MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTE APLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL PHAILRLDLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKNSSS VEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVL SGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQAGFAGDDAP RAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFY NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDS GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYV ALDYEQELETAKNSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIM KCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA SLSTFQQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTS AEREIVRDIKEKLAYVALDYEQELETAKNSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMI GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVA PPERKYSVWIGGSILASLSTFQQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ SKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD SLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKNSSSVEKSYELPDGQVITIG AERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSK EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0106650_circ_g.2

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