Detail information of orai.006G075900_circ_g.1


General Information
CircRNA Name orai.006G075900_circ_g.1
ID in PlantcircBase gra_circ_000589
Alias Chr06:29829474|29831821
Organism Gossypium raimondii
Position chrChr06: 29829474-29831821  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.006G075900
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.006G075900.2:10
Gorai.006G075900.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCGAGAAAGCCACCTAACCATTACTTTGTGATTACTCCACCTTTTGACCAGCTCTCTCAACAT
AAACTCATCATGCTTTTCTCGTAAAGAAGGAAGTACcttttcaagtgtttcttctattgcttca
tcactcaatttctcactgccacctttcttgagaatattatcacaaaaagtggcaagtagctccg
cacttgag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1023
Transcript exons: 29829474-29829623,29829693-29829779,29829866-29829901,29
830030-29830092,29830213-29830293,29830380-29830469,2983
0576-29830653,29830739-29830942,29831030-29831077,298316
36-29831821
CTTTTCAAGTGTTTCTTCTATTGCTTCATCACTCAATTTCTCACTGCCACCTTTCTTGAGAATA
TTATCACAAAAAGTGGCAAGTAGCTCCGCACTTGAGCTTCCAACAACACCCTTATTGCAAAAGA
CTTCAAAAGCCTCCTTGAGAGCCTTGTGAAAGAGAGTATGATTTTGAAAACAATCATTCACATA
GGCTAGGTACTTATCATGCAGCTCAATCACTTTCCTCACGAAAACCTGCTCTTGCATGCCAACG
ACATCCTTTTTATCAGCCTTTTTGGTGCTTGCAGCATCCTCAGCCTGTTTGACCAAAGCTGTGC
CTTCAGCAGTTACATGCTGTTTGAAAATGCTTGATATGGGATCTAAGCCTCGAGGAATTTTAGA
AAAGAGTCTAAACATTCTTGACAAATCATCCACCTTGTCGTCTCTGAGCAATGCATGGCAGCCG
GAGTGCTCTTTATCGAGAAGTCGGGTTTCCCATACAGATAACAACTCATGTTGAACTTTCTCGA
GCAGTTTTGGCTCACTACTAGAATGCAAGTAATGGGAGACCCTATCCTTCTCACATTTTAAACA
TTCCTCAGATTTCAACATGTAATCCGGACAAGAATCATCTACGATCCAATTTGCAGCTTTCCTC
GAGTAGTAGGCAGCAGTATCTTTGAGCATAGTAGCCTCAAAGTCATTCTCATAGTAATCCATTT
GCCCCATTCCAATTTCAACAAATATATATAAAACGTTCTTCAACAAAGCGCGATCAATCTGCTC
GCCTTCACGTTCTTGATCAATCAGAGAAATTACAGCATCTCTCACTTTTGCATTTAGCTCTTGG
TAAACCAGTTCTCGGAAACACGTGAGTCCAACTTCATTAAGGGGAGGTAGTGACCTCCGAGCAA
TAAAGTACCGATCAAGGTAATGGAAGAACCGAGAAAGCCACCTAACCATTACTTTGTGATTACT
CCACCTTTTGACCAGCTCTCTCAACATAAACTCATCATGCTTTTCTCGTAAAGAAGGAAGTAC

Genomic sequence CTTTTCAAGTGTTTCTTCTATTGCTTCATCACTCAATTTCTCACTGCCACCTTTCTTGAGAATA
TTATCACAAAAAGTGGCAAGTAGCTCCGCACTTGAGCTTCCAACAACACCCTTATTGCAAAAGA
CTTCAAAAGCCTCCTTGAGAGCCTAGAGAAAATACAACAAATCATGGGATGTATCTTGAAAACT
GTCTTTGAAATACTATTTATTACGAACCTTGTGAAAGAGAGTATGATTTTGAAAACAATCATTC
ACATAGGCTAGGTACTTATCATGCAGCTCAATCACTTTCCTCACGAAAACCTGAAAACCACAAA
AGATAGAAGTAAAAAATCAACTTCCATACTTTGATCCGATCCAGAGCTATGTAGAACAAGTGAA
GATTTTACCTGCTCTTGCATGCCAACGACATCCTTTTTATCAGCCTATTTAAGGGAGAAAACAT
TTCGATATGATCAGAGATTTTTTTAAGAAAATGAAAGTGATATCTTCATTAAATTCTTAATCAG
ATTTTTATACCATAAGCTGAAAGACTGACAAGAAAAATGCATACCTTTTTGGTGCTTGCAGCAT
CCTCAGCCTGTTTGACCAAAGCTGTGCCTTCAGCAGTTACATGCTGGCATCGGAAATGAGATCA
TATATTTCAAATGGTGAAAGAATGGAAATATTACATAAAGGATGAATAAATGAAAAGGGATAAT
AACTTAATCCATGGAGAAGCTAAGAGATAGTTAACCTGTTTGAAAATGCTTGATATGGGATCTA
AGCCTCGAGGAATTTTAGAAAAGAGTCTAAACATTCTTGACAAATCATCCACCTAAAAGTTGAA
ACAGAATGGTGATCAATGGTTAATTAATAATATATGAAGCATTAAAATCAATAACTAATAAATC
CGGTAAGCACCTTGTCGTCTCTGAGCAATGCATGGCAGCCGGAGTGCTCTTTATCGAGAAGTCG
GGTTTCCCATACAGATAACAACTCATGTTGAACTTTCTATAAAAGAAAAAGAGCATATAAGAAA
CATTTTTAGAAAAAAGTTTTCATCCAAGACCAAAGGGTGAAGGGTGAATTTGTTCGTATTATAA
AAGAAAATACCAACCTCGAGCAGTTTTGGCTCACTACTAGAATGCAAGTAATGGGAGACCCTAT
CCTTCTCACATTTTAAACATTCCTCAGACTGAAATACGAAAGCAAAATGAACAATTAGATACTA
TTTGAGTGGGAAAAATTAAATAGTAATGACCGTATAATCATATATATACTTTCAACATGTAATC
CGGACAAGAATCATCTACGATCCAATTTGCAGCTTTCCTCGAGTAGTAGGCAGCAGTATCTTTG
AGCATAGTAGCCTCAAAGTCATTCTCATAGTAATCCATTTGCCCCATTCCAATTTCAACAAATA
TATATAAAACGTTCTTCAACAAAGCGCGATCAATCTGCTCGCCTTCACGTTCTTGATCAATCTG
GTTTGAGATTAGGATGTTTGTTAATGTTATTTGGGCGAAAAATGGAAGGTGCACAACTAATGCG
AAAAAGAAACTTGAACTTACCAGAGAAATTACAGCATCTCTCACTTTTGCATTTAGCTCTTGGT
AAACCTAAACCAGAGAATGTTAGCATATAAGCAATGTTAAAAGAACAGACCGGAGATCGAACTA
ATCAGACCTCCAGTTCCCAATTCAGTAGGTTCAATCGGTTCAACCGCGGTTGGTTTGATATTTT
CTTGAGTTTTTAATGTTTAAATACTTTAAACATTTATTCGATGTAAAGTAAATTATAAAACTAG
ATAAAATTTAACAGAAAAGCGCATTTAGCTTAATGTTAATATTTTTAATATAAAATTAAGATAT
TAATAGCTTAAATCTCAGTAATTACAAATAAAATTTTGAAACATATATAGAAAACAGTCTTTTA
CTGGTCCGATCCGGCTTTTTACCAATTTTTTTGTTGTTGAACCACTTATTGACAAGTTCAACGT
CTATCTACCTTTTTATACCTATTGGATCAGACTGACCACCAGTTCCTGTTCAACCAGGTGAACC
GGCTGATCTGGTCCGGCTTTTTATTCCTAGCATATAAGATGCCAATGTTACTCTACATAGAAAG
GAAAAAAAAAAAAGACAAGATTATGGCAAATACATCCTATCCGCCCATACCAGTTCTCGGAAAC
ACGTGAGTCCAACTTCATTAAGGGGAGGTAGTGACCTCCGAGCAATAAAGTACCGATCAAGGTA
ATGGAAGAACCGAGAAAGCCACCTAACCATTACTTTGTGATTACTCCACCTTTTGACCAGCTCT
CTCAACATAAACTCATCATGCTTTTCTCGTAAAGAAGGAAGTAC
Conservation Information
Conserved circRNAs gar_circ_000200
PMCS 0.545687787
Functional Information
Coding potential Y
Potential coding position 29831786-29829476(-)
Potential amino acid sequence MLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRELVYQELNAKVRDAVI
SLIDQEREGEQIDRALLKNVLYIFVEIGMGQMDYYENDFEATMLKDTAAYYSRKAANWIVDDSC
PDYMLKSEECLKCEKDRVSHYLHSSSEPKLLEKVQHELLSVWETRLLDKEHSGCHALLRDDKVD
DLSRMFRLFSKIPRGLDPISSIFKQHVTAEGTALVKQAEDAASTKKADKKDVVGMQEQVFVRKV
IELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVVGSSSAELLATFCDNILKKGGSEKLSD
EAIEETLEKVLPSLREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVG
LTCFRELVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLYIFVEIGMGQMDYYENDFEATM
LKDTAAYYSRKAANWIVDDSCPDYMLKSEECLKCEKDRVSHYLHSSSEPKLLEKVQHELLSVWE
TRLLDKEHSGCHALLRDDKVDDLSRMFRLFSKIPRGLDPISSIFKQHVTAEGTALVKQAEDAAS
TKKADKKDVVGMQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVVGSSSA
ELLATFCDNILKKGGSEKLSDEAIEETLEKVLPSLREKHDEFMLRELVKRWSNHKVMVRWLSRF
FHYLDRYFIARRSLPPLNEVGLTCFRELVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLY
IFVEIGMGQMDYYENDFEATMLKDTAAYYSRKAANWIVDDSCPDYMLKSEECLKCEKDRVSHYL
HSSSEPKLLEKVQHELLSVWETRLLDKEHSGCHALLRDDKVDDLSRMFRLFSKIPRGLDPISSI
FKQHVTAEGTALVKQAEDAASTKKADKKDVVGMQEQVFVRKVIELHDKYLAYVNDCFQNHTLFH
KALKEAFEVFCNKGVVGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVLPSLREKHDEFM
LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRELVYQELNAKVRDAVIS
LIDQEREGEQIDRALLKNVLYIFVEIGMGQMDYYENDFEATMLKDTAAYYSRKAANWIVDDSCP
DYMLKSEECLKCEKDRVSHYLHSSSEPKLLEKVQHELLSVWETRLLDKEHSGCHALLRDDKVDD
LSRMFRLFSKIPRGLDPISSIFKQHVTAEGTALVKQAEDAASTKKADKKDVVGMQEQVFVRKVI
ELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVVGSSSAELLATFCDNILKKGGSEKLSDE
AIEETLEK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b