Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | orai.006G075900_circ_g.1 |
| ID in PlantcircBase | gra_circ_000589 |
| Alias | Chr06:29829474|29831821 |
| Organism | Gossypium raimondii |
| Position | chrChr06: 29829474-29831821 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.006G075900 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 4 |
| Tissues | ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Gorai.006G075900.2:10 Gorai.006G075900.1:10 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | gar_circ_000200 |
| PMCS | 0.545687787 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
29831786-29829476(-) |
| Potential amino acid sequence |
MLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRELVYQELNAKVRDAVI SLIDQEREGEQIDRALLKNVLYIFVEIGMGQMDYYENDFEATMLKDTAAYYSRKAANWIVDDSC PDYMLKSEECLKCEKDRVSHYLHSSSEPKLLEKVQHELLSVWETRLLDKEHSGCHALLRDDKVD DLSRMFRLFSKIPRGLDPISSIFKQHVTAEGTALVKQAEDAASTKKADKKDVVGMQEQVFVRKV IELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVVGSSSAELLATFCDNILKKGGSEKLSD EAIEETLEKVLPSLREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVG LTCFRELVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLYIFVEIGMGQMDYYENDFEATM LKDTAAYYSRKAANWIVDDSCPDYMLKSEECLKCEKDRVSHYLHSSSEPKLLEKVQHELLSVWE TRLLDKEHSGCHALLRDDKVDDLSRMFRLFSKIPRGLDPISSIFKQHVTAEGTALVKQAEDAAS TKKADKKDVVGMQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVVGSSSA ELLATFCDNILKKGGSEKLSDEAIEETLEKVLPSLREKHDEFMLRELVKRWSNHKVMVRWLSRF FHYLDRYFIARRSLPPLNEVGLTCFRELVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLY IFVEIGMGQMDYYENDFEATMLKDTAAYYSRKAANWIVDDSCPDYMLKSEECLKCEKDRVSHYL HSSSEPKLLEKVQHELLSVWETRLLDKEHSGCHALLRDDKVDDLSRMFRLFSKIPRGLDPISSI FKQHVTAEGTALVKQAEDAASTKKADKKDVVGMQEQVFVRKVIELHDKYLAYVNDCFQNHTLFH KALKEAFEVFCNKGVVGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVLPSLREKHDEFM LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRELVYQELNAKVRDAVIS LIDQEREGEQIDRALLKNVLYIFVEIGMGQMDYYENDFEATMLKDTAAYYSRKAANWIVDDSCP DYMLKSEECLKCEKDRVSHYLHSSSEPKLLEKVQHELLSVWETRLLDKEHSGCHALLRDDKVDD LSRMFRLFSKIPRGLDPISSIFKQHVTAEGTALVKQAEDAASTKKADKKDVVGMQEQVFVRKVI ELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVVGSSSAELLATFCDNILKKGGSEKLSDE AIEETLEK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |