Detail information of Os01g0283100_circ_g.1


General Information
CircRNA Name Os01g0283100_circ_g.1
ID in PlantcircBase osa_circ_001357
Alias NA
Organism Oryza sativa
Position chr1: 10122961-10123210  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0283100
Parent gene annotation Similar to Ferripyochelin-binding protein-like. (Os01t0283100-01
);Similar to Ferripyochelin-binding protein-like. (Os01t0283100-
02)
Parent gene strand +
Alternative splicing Os01g0283100_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GC-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGTTTGTGGAAAATACATTGTTTTGCACTATTTAGGTAGCAGTTACATTTTGTAGGTTTAGA
TGCCTAGACATTTCTGCATGGGCGCAACAAGAATGTgttgtgcattactctctttattacttca
ctttcagttttgattgttagtcaggtctcgtctaaagtttgcttcacttgattggctatttgtt
gttgcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGTGCATTACTCTCTTTATTACTTCACTTTCAGTTTTGATTGTTAGTCAGGTCTCGTCTAAA
GTTTGCTTCACTTGATTGGCTATTTGTTGTTGCAATTAGGCACACCAAATACATGATCACCATC
TGTTTAGCGTACCAAGATTCAACTAGTTTGTGGAAAATACATTGTTTTGCACTATTTAGGTAGC
AGTTACATTTTGTAGGTTTAGATGCCTAGACATTTCTGCATGGGCGCAACAAGAATGT
Conservation Information
Conserved circRNAs NA
PMCS 0.117
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017