Detail information of Os03g0177400_circ_g.2


General Information
CircRNA Name Os03g0177400_circ_g.2
ID in PlantcircBase osa_circ_018180
Alias NA
Organism Oryza sativa
Position chr3: 4095656-4096330  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0177400
Parent gene annotation EF-1 alpha. (Os03t0177400-01);Similar to Elongation factor 1-alp
ha. (Os03t0177400-02)
Parent gene strand +
Alternative splicing Os03g0177400_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTTGCTATTATTTCATTTTTTGTATCTTATATGGTGTTTATAATATGTTTCATACCATTTGT
AGTTAGTAATGTATTTGTATGCTGGTGCCTGCCCCTgtatatatctgtagtgtttggtcttttg
ttatgattgatgagcctagcacttgtttatacatatttgtgatgctattgcagaaacttttggt
tacataaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 675
Transcript exons: 4095656-4096330
GTATATATCTGTAGTGTTTGGTCTTTTGTTATGATTGATGAGCCTAGCACTTGTTTATACATAT
TTGTGATGCTATTGCAGAAACTTTTGGTTACATAAATGATTTACTGCTATATTCAGTTGGAAAT
TGGAAATGAACATATTCGTGATGCTATTCCAGATATTCTTGTTTTCTGTTATGATTGATGAGCA
ACTTCTGTGAATATTCATGATGCTAGTCCTGAATACTGTTGATTACATCAATGAAGTAGCATTT
TCTTTTATTGATTTATCCCTCTGTGCTAGTTTTTCTGACTGTCTACCTTCTATGCATCTAAGAC
TGCAATTTACCATGCATCTAAGGCTGCTACTGTTGATTGTTGCTTTTGTTATGACTGTCTGTCT
TTATGATGCATCTAAGATTGCAATTGTTGTTGGTTGCTTTCCTGCTACTACTAGCTTTAGTAAT
TTACTGCTGCAAGAAACTATACATATCTTCTGTTAGATTTGGTTAAGTTCATTTAGATATCGTG
CTGTATGTTACTTTATACTAGACTTGTATTGATGTTGCTGTCCACCTGTATTTCATTACATATT
GGTTGCTATTATTTCATTTTTTGTATCTTATATGGTGTTTATAATATGTTTCATACCATTTGTA
GTTAGTAATGTATTTGTATGCTGGTGCCTGCCCCT

Genomic sequence GTATATATCTGTAGTGTTTGGTCTTTTGTTATGATTGATGAGCCTAGCACTTGTTTATACATAT
TTGTGATGCTATTGCAGAAACTTTTGGTTACATAAATGATTTACTGCTATATTCAGTTGGAAAT
TGGAAATGAACATATTCGTGATGCTATTCCAGATATTCTTGTTTTCTGTTATGATTGATGAGCA
ACTTCTGTGAATATTCATGATGCTAGTCCTGAATACTGTTGATTACATCAATGAAGTAGCATTT
TCTTTTATTGATTTATCCCTCTGTGCTAGTTTTTCTGACTGTCTACCTTCTATGCATCTAAGAC
TGCAATTTACCATGCATCTAAGGCTGCTACTGTTGATTGTTGCTTTTGTTATGACTGTCTGTCT
TTATGATGCATCTAAGATTGCAATTGTTGTTGGTTGCTTTCCTGCTACTACTAGCTTTAGTAAT
TTACTGCTGCAAGAAACTATACATATCTTCTGTTAGATTTGGTTAAGTTCATTTAGATATCGTG
CTGTATGTTACTTTATACTAGACTTGTATTGATGTTGCTGTCCACCTGTATTTCATTACATATT
GGTTGCTATTATTTCATTTTTTGTATCTTATATGGTGTTTATAATATGTTTCATACCATTTGTA
GTTAGTAATGTATTTGTATGCTGGTGCCTGCCCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.220017765
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017