Detail information of 3_circ_ig.3


General Information
CircRNA Name 3_circ_ig.3
ID in PlantcircBase ath_circ_020284
Alias Ath_circ_FC1862
Organism Arabidpsis thaliana
Position chr3: 2319614-2320323  JBrowse»
Reference genome TAIR10.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 4
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTAGAGGCAAAACGTGTTACCAAAGTTCTCTAGTCATTCTCCAACAAAATCAATCTTAGAAAC
ACCAGAAAAGAACATGATTATCAAAGAATGTAGAACcgtatataagtgatgattagaagaaagg
catacaaagatttagttacctttacttgtcaactcttgggttacctttacttgtcaattcttgg
gtcaactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTATATAAGTGATGATTAGAAGAAAGGCATACAAAGATTTAGTTACCTTTACTTGTCAACTCT
TGGGTTACCTTTACTTGTCAATTCTTGGGTCAACTTATATAAGTTTTCAGAGAAGAAACCAGGT
TAATCATCAAATTCAATGAGTATGCGTCTACATTCATTCAAGGATAAAGGATCACACTAGTGAT
ATTACTAAGTTTGGCATCAATGGAATACAATTATCTAACATCCAAAACCACCAGCTACAGAAAC
CCATACACTTCAATATGTCAGCATCTCAGCATTCTAAGTTAGTCAAGGATCCTGCAATGCTTGC
TGTGTACTAAGAAAAACAAGTGGAAGGACAATTGGGGCAGAAGCTAATATTGGGGTACTTATGG
TTCTCTCATATGAGGTAGTTTAAGTCCATCAGCATCATTACAGGTATCAATTCCTCTATCACTA
CTTAACTGTTTGGGTGACAATATCTCAGACTCGACCAACTCTTAACAGTAATGCTACATTTATA
CAAGAAACTTATCCTGAAACAGTCTCTATGACCCTTACTCAACACAAAGGCACCCACAAATCCG
TCCATTTATCAAAACCTTTAGACTATGCTAAGAGCCTAGAGGCAAAACGTGTTACCAAAGTTCT
CTAGTCATTCTCCAACAAAATCAATCTTAGAAACACCAGAAAAGAACATGATTATCAAAGAATG
TAGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.11399142
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a