Detail information of Os07g0492100_circ_g.3


General Information
CircRNA Name Os07g0492100_circ_g.3
ID in PlantcircBase osa_circ_033874
Alias NA
Organism Oryza sativa
Position chr7: 18339992-18343438  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0492100
Parent gene annotation DNA helicase, UvrD/REP type domain containing protein. (Os07t049
2100-01)
Parent gene strand -
Alternative splicing Os07g0492100_circ_g.1 Os07g0492100_circ_g.2 Os07g0492100_circ_g.4 Os07g0492100_circ_g.5 Os07g0492100_circ_g.6 Os07g0492100_circ_g.7 Os07g0492100_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0492100-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACATGAAGGCAAAGCTCATTAAATACAACTGCAACAAATTAATTGAACCTGAGGTAGCATATC
TCCAGCAGAAGAAATGACCACTGAAACTGATTGTTCcttatcaagcagcctttttggattttga
aatgcctgtttcttcgcccattgatgaaatatatgtgaaattattgctctatcctcaatttcaa
acctgcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATCAAGCAGCCTTTTTGGATTTTGAAATGCCTGTTTCTTCGCCCATTGATGAAATATATGT
GAAATTATTGCTCTATCCTCAATTTCAAACCTGCAAAAAGAGAAGAACGAATTTGTTTTGGTCA
GGGGAGAAACAAAATACAGCAAATGACATAACATAAAATAGCAAGTGTTTGTTATAGATGCAAA
TTATCTGTTCTTTAAATACATTGTGCAGGAAAAATAACTGCTTGCACAAAAACAACTCACAAGG
GAAATAGATCATATCACGCTGATTTACCTCTTCAAGAAATCATTAGCAAGACATGGCTGATCCA
TTTCTGGGAAAGGTGAAGTTTCATTCCGTACCACCATAGGCCTTTCAACTGATGTATCTCCTTC
AGGTTGATCAAATGGAATGTTCACCGGCTGTTCAGGAGTTCTTCTCACAGTTCCCTCACCCTTC
ACATTATTGAAAAGAGAAAATTATGTTAAGCTACTATTGCTATAATAGATTATATTACTCATAT
AAATGACTTTCTAGATTGATATATAGCTGTATACCATCTAAAATTTACAATTTTTTAAAATGCT
CCAAGCAGATTGTATGGTGGAATACACAACAATATGGGATAGAGATACCATTCTTCAGGTCTCG
ATACCATTCAAAACAGGATCTCAAAATAGTGCTCACCTGTACCTCAAGAAGGTGAGCAGGAATC
TCCCTGAGGAAGCGTGAAGGTTGCAGCAGCTAGACGCCAGTAATAGTTTAAGTCAGTGAAATCT
AGATACTTTATAAGGATGAATACAATATAAAATCACCTGCCTGGCGATTAGAGTCAACCGTGAC
ATGTAAGATGTACAGTTTCTTTCGAGCTCGTGTCATTGCAACATAGAATAGCCTTCTCTCCTCC
TGTAATTACAACCAAGTTGCAGAATACATACAGAAAACCACCTCAGGGAAAGAAAAAAAATTTG
AACAAACCTCCAGTGTGCTTCCAGCTTCTTTCACAGTGCCATTGTACTCATGCAACAAAGGAAT
TTCTGAATCATTTGCCTGAGCAAAAGGACTGAAGTGAACAAAAGCAAGAAAATACTCCTTTGGA
AAAATTAACGTAGTTGCATAATATCAGAATAAAACAAACACATGAACCAAAATATGTTACCCAT
CCATAAATTTTGCAGTGTTTAGACTCTCCATTACAAATCAAAGAAAAACAAAGGCATATAACAA
GACCAGTCCTCTATGATGGCACTCATGTTGTCACAGGCAAGAATAGTACAAAGTTACTCTGAAT
CAAGTCAATATTTCAAATTCCTCATAATTCATTATCCACAGCTCTATATATCATAACCTTTCTG
AATTTTAATGTATGTCTACCATATACCATTCCCAGCTTGCACATTTTTTTATCGTCACAACATA
AAACAGCATACTTCTGATAAAAAATGAGAAAACATTACGGCTAAATTCTATGATTTTATAACAC
ATAGAAAGATGAACAAACCGTAAATTCCCTACTGATTAAAGTACAATACCTGCACGATAAACAC
AACATCCCACTCTAAACCTTTTGACTGCGAATCATAGAAGGGAATATACATCTTTTAGTGTCAG
AATTGCCAAATGGCACAAATAAATTTATTGCAGTTAAGGGAATAAAGAACCTGGTGGATAGTTG
TTAATGTGATAGAGTTTTTATTTTCCTCCTTTCGTGATCTGAAGTTTTCAGTTTCTCTCAAAGA
GATATAATCAATAAAGGCTTTAAGTGTAGAAGCACAGCCTTTCTCCTCAGTCTTGCTTGTATCC
ACTGAACTAGAAAAATGTGTTGATAAGAAGTCAGACACATCATCCATTAAAAACTGAAGGACCT
GCAGTTTGATTTAGGATAAGTTAACACCACCTCTCTGTATACAAAATGTATGTCAAATATAAAC
CATCCAAACAAAAAATGTTCAAAATCCAAAAAAGAAAGTTCATAAAGAGACCTCATATGAGTCT
AACAAACCAAATCAAATATCGGTAATATCAACAACAATTAGCGTACTTGGGTTTGATATATATT
GCAACGCCCAATCAGAACAAAAAAGAACTTTGGTGGAATATAGCTCCCCCGCCCCCCGACCTCT
CCTATCCTCTTATGTCATGTTAGGGTGCATTTTATTCTTAAGTATTCCCTACTGAAAACCTTAG
GTGGAGCTGCACATGCAAACCAAACACCTCGTGCAAGTTGCTGCAGACGAAGATTATGATTTCC
ATCTACATGTACTGGTTCTTAATACATACCAAAGCAACCATTTTAATTATCGCCAAAACACCGA
GTCAAGTAATAGGGGACAGGAAGTTATAAACATAATCAACAAGGAGTCCAAACAATATGGGAAA
CTAAGCTAGAATTAACTATTCATAACCTTGTGTAACACACTATTGTTTCATCAATAAAATTGGT
GATGGTATGGTAAATTAGACATAGTCCATGGTTTTAAGTCCTGGAAATAGACAATTGACATTGA
GTGTCCAACCATGGTGATTGACAAAAAAAAAAGCAATTTTAAGTCATTTTTATCAAGAATAAGT
GTCTTCCGATGGATGCTTCTGACTGACCCAAAGCAGCAGGCTACTACAGTACAAATATGTAAAT
ATAAATGCATCTTTGTATCCTTCAAGCTCTGTTGCCATAATTTCTTCAAGTTCTGAATGCTTGA
GACAGTATAATCCAAAATTGATTCTTGGTGCATTCAAAGTTTAGTCTTTCTCGAGGATCAATGT
GCAAAACACTAAGAGCATCAAAGGTGTATGAACTGTACTTACTGATCTGATGTCATTATCTTCA
TTTAATAATTTACCCCCATCAGCATCAACAATCGCACGCTTTTCAAGTAGGTATTTCTGTCAAA
AAATGATAAAGTAGCTGTAATTAAAGAAATTGAACAGAATCAAGCACAGTGATATTAAACGTTT
AATGAAGCTCAGTACTAGTAAACCTAACAGACTCAATAAGTTTGAATGTGCATCACTATTTTGA
TCCAAAATACGTAAAATATAGCATATCTTTGTAGTTTGTACTGCAAAAGTGCATTAGGGCCTAA
AGCATGGCTTTGTAGCTTTTCTTGCCATGAACCATACAACAGAATACTGCTTAGATGGTCATCA
GGGATATTAATACTTTTTATGACCACAACATGCTAATAGGACCTCAAGAAGTCATGATGCACAT
ACAAATGTATGGCGCCGATAAATTGTTGATTTATTTTCTAGGATGAAACAAAATACCTTGAAGT
GAACCAGAGAACAGTGAATAGTGCAGCACTTGCACCATAAGAAAAAAAAATGGCGCGTTTCTAA
ATCTACTTCTAACAGATCATACATGAAGGCAAAGCTCATTAAATACAACTGCAACAAATTAATT
GAACCTGAGGTAGCATATCTCCAGCAGAAGAAATGACCACTGAAACTGATTGTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.110278421
Functional Information
Coding potential Y
Potential coding position 18343401-18339994(-)
Potential amino acid sequence MLPQKYLLEKRAIVDADGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSVDTSKTEEKGCAST
LKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQANDSEIPLLHEYNGTVK
EAGSTLEEERRLFYVAMTRARKKLYILHVTVDSNRQLLQPSRFLREIPAHLLEVQGEGTVRRTP
EQPVNIPFDQPEGDTSVERPMVVRNETSPFPEMDQPCLANDFLKRFEIEDRAIISHIFHQWAKK
QAFQNPKRLLDKEQSVSVVISSAGDMLPQKYLLEKRAIVDADGGKLLNEDNDIRSVLQFLMDDV
SDFLSTHFSSSVDTSKTEEKGCASTLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLE
WDVVFIVQANDSEIPLLHEYNGTVKEAGSTLEEERRLFYVAMTRARKKLYILHVTVDSNRQLLQ
PSRFLREIPAHLLEVQGEGTVRRTPEQPVNIPFDQPEGDTSVERPMVVRNETSPFPEMDQPCLA
NDFLKRFEIEDRAIISHIFHQWAKKQAFQNPKRLLDKEQSVSVVISSAGDMLPQKYLLEKRAIV
DADGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSVDTSKTEEKGCASTLKAFIDYISLRETE
NFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQANDSEIPLLHEYNGTVKEAGSTLEEERRLFY
VAMTRARKKLYILHVTVDSNRQLLQPSRFLREIPAHLLEVQGEGTVRRTPEQPVNIPFDQPEGD
TSVERPMVVRNETSPFPEMDQPCLANDFLKRFEIEDRAIISHIFHQWAKKQAFQNPKRLLDKEQ
SVSVVISSAGDMLPQKYLLEKRAIVDADGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSVDT
SKTEEKGCASTLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQANDSEI
PLLHEYNGTVKEAGSTLEEERRLFYVAMTRARKKLYILHVTVDSNRQLLQPSRFLREIPAHLLE
VQGEGTVRRTPEQPVNIPFDQPEGDTSVERPMVVRNETSPFPEMDQPCLANDFLKRFEIEDRAI
ISHIFHQWAKKQAFQNPKRLLDK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017